Stanisław Ołdziej
Title
Cited by
Cited by
Year
Coarse-graining of condensed phase and biomolecular systems
GA Voth
CRC press, 2008
6372008
United‐residue force field for off‐lattice protein‐structure simulations: III. Origin of backbone hydrogen‐bonding cooperativity in united‐residue potentials
A Liwo, R Kaźmierkiewicz, C Czaplewski, M Groth, S Ołdziej, RJ Wawak, ...
Journal of Computational Chemistry 19 (3), 259-276, 1998
1861998
Recent improvements in prediction of protein structure by global optimization of a potential energy function
J Pillardy, C Czaplewski, A Liwo, J Lee, DR Ripoll, R Kaźmierkiewicz, ...
Proceedings of the National Academy of Sciences 98 (5), 2329-2333, 2001
1852001
Modification and optimization of the united-residue (UNRES) potential energy function for canonical simulations. I. Temperature dependence of the effective energy function and …
A Liwo, M Khalili, C Czaplewski, S Kalinowski, S Ołdziej, K Wachucik, ...
The Journal of Physical Chemistry B 111 (1), 260-285, 2007
1762007
Computational techniques for efficient conformational sampling of proteins
A Liwo, C Czaplewski, S Ołdziej, HA Scheraga
Current opinion in structural biology 18 (2), 134-139, 2008
1712008
Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: assessment in two blind tests
S Ołdziej, C Czaplewski, A Liwo, M Chinchio, M Nanias, JA Vila, M Khalili, ...
Proceedings of the National Academy of Sciences 102 (21), 7547-7552, 2005
1532005
A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: application to the UNRES force field
A Liwo, P Arłukowicz, C Czaplewski, S Ołdziej, J Pillardy, HA Scheraga
Proceedings of the National Academy of Sciences 99 (4), 1937-1942, 2002
1382002
Parametrization of backbone− electrostatic and multibody contributions to the UNRES force field for protein-structure prediction from ab initio energy surfaces of model systems
A Liwo, S Ołdziej, C Czaplewski, U Kozłowska, HA Scheraga
The Journal of Physical Chemistry B 108 (27), 9421-9438, 2004
1142004
CAS MCSCF/CAS MCQDPT2 study of the mechanism of singlet oxygen addition to 1, 3-butadiene and benzene
M Bobrowski, A Liwo, S Ołdziej, D Jeziorek, T Ossowski
Journal of the American Chemical Society 122 (34), 8112-8119, 2000
1032000
Optimization of the UNRES force field by hierarchical design of the potential-energy landscape. 3. Use of many proteins in optimization
S Ołdziej, J Ła̧giewka, A Liwo, C Czaplewski, M Chinchio, M Nanias, ...
The Journal of Physical Chemistry B 108 (43), 16950-16959, 2004
772004
A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions
A Liwo, M Baranowski, C Czaplewski, E Gołaś, Y He, D Jagieła, P Krupa, ...
Journal of molecular modeling 20 (8), 1-15, 2014
752014
β-hairpin-forming peptides; models of early stages of protein folding
A Lewandowska, S Ołdziej, A Liwo, HA Scheraga
Biophysical chemistry 151 (1-2), 1-9, 2010
682010
Development of physics-based energy functions that predict medium-resolution structures for proteins of the α, β, and α/β structural classes
J Pillardy, C Czaplewski, A Liwo, WJ Wedemeyer, J Lee, DR Ripoll, ...
The Journal of Physical Chemistry B 105 (30), 7299-7311, 2001
632001
Potential of mean force of hydrophobic association: Dependence on solute size
E Sobolewski, M Makowski, C Czaplewski, A Liwo, S Ołdziej, ...
The Journal of Physical Chemistry B 111 (36), 10765-10774, 2007
582007
Azapeptides structurally based upon inhibitory sites of cystatins as potent and selective inhibitors of cysteine proteases
E Wieczerzak, P Drabik, L Łankiewicz, S Ołdziej, Z Grzonka, ...
Journal of medicinal chemistry 45 (19), 4202-4211, 2002
582002
Mean-field interactions between nucleic-acid-base dipoles can drive the formation of a double helix
Y He, M Maciejczyk, S Ołdziej, HA Scheraga, A Liwo
Physical review letters 110 (9), 098101, 2013
552013
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets
Y He, MA Mozolewska, P Krupa, AK Sieradzan, TK Wirecki, A Liwo, ...
Proceedings of the National Academy of Sciences 110 (37), 14936-14941, 2013
532013
Determination of the Potentials of Mean Force for Rotation about Cα−Cα Virtual Bonds in Polypeptides from the ab Initio Energy Surfaces of Terminally Blocked …
S Ołdziej, U Kozłowska, A Liwo, HA Scheraga
The Journal of Physical Chemistry A 107 (40), 8035-8046, 2003
532003
Simulation of protein structure and dynamics with the coarse-grained UNRES force field
A Liwo, C Czaplewski, S Ołdziej, AV Rojas, R Kazmierkiewicz, ...
Coarse-graining of condensed phase and biomolecular systems 1, 1391-1411, 2008
522008
Disulfide bonding arrangements in active forms of the somatomedin B domain of human vitronectin
Y Kamikubo, R De Guzman, G Kroon, S Curriden, JG Neels, MJ Churchill, ...
Biochemistry 43 (21), 6519-6534, 2004
512004
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