Jose A Navas-Molina
Jose A Navas-Molina
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
21522019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9692017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5492018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
MSystems 2 (2), 2017
4682017
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
4662014
Advancing our understanding of the human microbiome using QIIME
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...
Methods in enzymology 531, 371-444, 2013
4642013
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2392018
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity
S Shalapour, XJ Lin, IN Bastian, J Brain, AD Burt, AA Aksenov, ...
Nature 551 (7680), 340-345, 2017
1832017
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
1732018
Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2: e00191-16
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
1502017
Balance trees reveal microbial niche differentiation
JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ...
MSystems 2 (1), 2017
1342017
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 2016
972016
Phylogenetic placement of exact amplicon sequences improves associations with clinical information
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
Msystems 3 (3), 2018
822018
Bringing the dynamic microbiome to life with animations
Y Vázquez-Baeza, A Gonzalez, L Smarr, D McDonald, JT Morton, ...
Cell host & microbe 21 (1), 7-10, 2017
472017
From sample to multi-omics conclusions in under 48 hours
RA Quinn, JA Navas-Molina, ER Hyde, SJ Song, Y Vázquez-Baeza, ...
Msystems 1 (2), 2016
362016
Correcting for microbial blooms in fecal samples during room-temperature shipping
A Amir, D McDonald, JA Navas-Molina, J Debelius, JT Morton, E Hyde, ...
MSystems 2 (2), 2017
332017
The oral and skin microbiomes of captive komodo dragons are significantly shared with their habitat
ER Hyde, JA Navas-Molina, SJ Song, JG Kueneman, G Ackermann, ...
Msystems 1 (4), 2016
332016
Balance trees reveal microbial niche differentiation. mSystems 2: e00162-16
JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ...
Downloaded from, 2017
292017
Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems. 2017; 2: e00191–16
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
PubMed PubMed Central, 0
19
Phylogenetic placement of exact amplicon sequences improves associations with clinical information. mSystems 3: e00021-18
S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ...
DOI 10, 00021-18, 2018
162018
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