| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 13851 | 2012 |
| Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 5483 | 2012 |
| Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation F Ozsolak, P Kapranov, S Foissac, SW Kim, E Fishilevich, AP Monaghan, ... Cell 143 (6), 1018-1029, 2010 | 468 | 2010 |
| A combinatorial code for CPE-mediated translational control M Piqué, JM López, S Foissac, R Guigó, R Méndez Cell 132 (3), 434-448, 2008 | 430 | 2008 |
| Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs K Fejes-Toth, V Sotirova, R Sachidanandam, G Assaf, GJ Hannon, ... Nature 457 (7232), 1028--1032, 2009 | 371* | 2009 |
| A general definition and nomenclature for alternative splicing events M Sammeth, S Foissac, R Guigó PLoS computational biology 4 (8), e1000147, 2008 | 341 | 2008 |
| ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets S Foissac, M Sammeth Nucleic acids research 35 (suppl_2), W297-W299, 2007 | 334 | 2007 |
| Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project FAANG Consortium, L Andersson, AL Archibald, CD Bottema, R Brauning, ... Genome biology 16, 1-6, 2015 | 325 | 2015 |
| Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions F Denoeud, P Kapranov, C Ucla, A Frankish, R Castelo, J Drenkow, ... Genome research 17 (6), 746-759, 2007 | 221 | 2007 |
| The qPCR data statistical analysis R Goni, P García, S Foissac Integromics White Paper 1, 1-9, 2009 | 131 | 2009 |
| Genome annotation in plants and fungi: EuGene as a model platform S Foissac, J Gouzy, S Rombauts, C Mathé, J Amselem, L Sterck, ... Current Bioinformatics 3 (2), 87-97, 2008 | 125 | 2008 |
| New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism P Kapranov, F Ozsolak, SW Kim, S Foissac, D Lipson, C Hart, S Roels, ... Nature 466 (7306), 642-646, 2010 | 124 | 2010 |
| Multi-species annotation of transcriptome and chromatin structure in domesticated animals S Foissac, S Djebali, K Munyard, N Vialaneix, A Rau, K Muret, D Esquerré, ... BMC biology 17, 1-25, 2019 | 105 | 2019 |
| An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog A Bonnet, C Cabau, O Bouchez, J Sarry, N Marsaud, S Foissac, ... BMC genomics 14, 1-19, 2013 | 74 | 2013 |
| Long noncoding RNA repertoire in chicken liver and adipose tissue K Muret, C Klopp, V Wucher, D Esquerré, F Legeai, F Lecerf, C Désert, ... Genetics Selection Evolution 49, 1-17, 2017 | 72 | 2017 |
| Evidence for transcript networks composed of chimeric RNAs in human cells S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ... PLoS One 7 (1), e28213, 2012 | 65 | 2012 |
| Integrating alternative splicing detection into gene prediction S Foissac, T Schiex BMC bioinformatics 6, 1-10, 2005 | 64 | 2005 |
| EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences S Foissac, P Bardou, A Moisan, MJ Cros, T Schiex Nucleic Acids Research 31 (13), 3742-3745, 2003 | 62 | 2003 |
| Efficient targeted transcript discovery via array-based normalization of RACE libraries S Djebali, P Kapranov, S Foissac, J Lagarde, A Reymond, C Ucla, C Wyss, ... Nature methods 5 (7), 629-635, 2008 | 44 | 2008 |
| RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific … F Jehl, F Degalez, M Bernard, F Lecerf, L Lagoutte, C Désert, M Coulée, ... Frontiers in Genetics 12, 655707, 2021 | 29 | 2021 |
