Dan Knights

Cited by

	All	Since 2016
Citations	66980	53279
h-index	54	53
i10-index	102	100

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20112012201320142015201620172018201920202021272 1218 2550 3798 5264 6701 8233 9541 11563 13989 3218

Co-authors

Rob KnightDirector, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSDVerified email at ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityVerified email at nau.edu
Gabriel Al-GhalithUniversity of MinnesotaVerified email at umn.edu
Jose C. ClementeAssociate Professor, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu
Pajau VangayLawrence Berkeley National LaboratoryVerified email at lbl.gov
Catherine LozuponeAssociate Professor of Medicine, University of Colorado, DenverVerified email at ucdenver.edu
Christian L LauberNationwide Children's HospitalVerified email at nationwidechildrens.org
Jonathan Brent ClaytonAssistant ProfessorVerified email at unomaha.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public HealthVerified email at hsph.harvard.edu
Tanya YatsunenkoBMSVerified email at wustl.edu
Jesse RR ZaneveldAssistant Professor, Division of Biological Sciences, University of Washington, BothellVerified email at uw.edu
Timothy J JohnsonUniversity of MinnesotaVerified email at umn.edu
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDVerified email at ucsd.edu
Maria Gloria Dominguez-BelloProfessor, Director, NJ Institute for Food, Nutrition and Health, Rutgers UniversityVerified email at rutgers.edu
Noah FiererProfessor, University of Colorado at BoulderVerified email at colorado.edu
William A WaltersPost-doc, Cornell UniversityVerified email at colorado.edu
Jun ChenMayo ClinicVerified email at mail.med.upenn.edu
Indi TrehanUniversity of Washington Pediatrics (Emergency Med; Infectious Dis); Global Health; EpidemiologyVerified email at uw.edu
Elizabeth CostelloStanford UniversityVerified email at stanford.edu

Dan Knights

University of Minnesota

Verified email at umn.edu - Homepage

Computational Biology Machine Learning Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010	23759	2010
Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012	6453	2012
Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012	5211	2012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814-821, 2013	4980	2013
Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011	4624	2011
The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014	1967	2014
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	1832	2019
A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012	1581	2012
UniFrac: an effective distance metric for microbial community comparison C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight The ISME journal 5 (2), 169-172, 2011	1528	2011
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011	1396	2011
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor MI Smith, T Yatsunenko, MJ Manary, I Trehan, R Mkakosya, J Cheng, ... Science 339 (6119), 548-554, 2013	947	2013
Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12 (5), 1-8, 2011	919	2011
Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013	746	2013
Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761-763, 2011	697	2011
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins NP McNulty, T Yatsunenko, A Hsiao, JJ Faith, BD Muegge, AL Goodman, ... Science translational medicine 3 (106), 106ra106-106ra106, 2011	522	2011
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	520	2018
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415-420, 2011	488	2011
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ... PLoS Comput Biol 9 (1), e1002863, 2013	444	2013
Bacterial community structures are unique and resilient in full-scale bioenergy systems JJ Werner, D Knights, ML Garcia, NB Scalfone, S Smith, K Yarasheski, ... Proceedings of the National Academy of Sciences 108 (10), 4158-4163, 2011	401	2011
Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome D Knights, KG Lassen, RJ Xavier Gut 62 (10), 1505-1510, 2013	399	2013

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