| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335, 2010 | 18874 | 2010 |
| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... nature 486 (7402), 207, 2012 | 5069 | 2012 |
| Human gut microbiome viewed across age and geography T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ... nature 486 (7402), 222-227, 2012 | 4256 | 2012 |
| Linking long-term dietary patterns with gut microbial enterotypes GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ... Science 334 (6052), 105-108, 2011 | 3836 | 2011 |
| Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ... Nature biotechnology 31 (9), 814, 2013 | 3618 | 2013 |
| The treatment-naive microbiome in new-onset Crohn’s disease D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ... Cell host & microbe 15 (3), 382-392, 2014 | 1553 | 2014 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... nature 486 (7402), 215, 2012 | 1384 | 2012 |
| Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans BD Muegge, J Kuczynski, D Knights, JC Clemente, A González, ... Science 332 (6032), 970-974, 2011 | 1196 | 2011 |
| UniFrac: an effective distance metric for microbial community comparison C Lozupone, ME Lladser, D Knights, J Stombaugh, R Knight The ISME journal 5 (2), 169-172, 2011 | 1190 | 2011 |
| Gut microbiomes of Malawian twin pairs discordant for kwashiorkor MI Smith, T Yatsunenko, MJ Manary, I Trehan, R Mkakosya, J Cheng, ... Science 339 (6119), 548-554, 2013 | 831 | 2013 |
| Moving pictures of the human microbiome JG Caporaso, CL Lauber, EK Costello, D Berg-Lyons, A Gonzalez, ... Genome biology 12 (5), R50, 2011 | 783 | 2011 |
| Cohabiting family members share microbiota with one another and with their dogs SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ... elife 2, e00458, 2013 | 583 | 2013 |
| Bayesian community-wide culture-independent microbial source tracking D Knights, J Kuczynski, ES Charlson, J Zaneveld, MC Mozer, RG Collman, ... Nature methods 8 (9), 761, 2011 | 499 | 2011 |
| The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins NP McNulty, T Yatsunenko, A Hsiao, JJ Faith, BD Muegge, AL Goodman, ... Science translational medicine 3 (106), 106ra106-106ra106, 2011 | 467 | 2011 |
| Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature biotechnology 29 (5), 415, 2011 | 395 | 2011 |
| A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ... PLoS computational biology 9 (1), 2013 | 376 | 2013 |
| Bacterial community structures are unique and resilient in full-scale bioenergy systems JJ Werner, D Knights, ML Garcia, NB Scalfone, S Smith, K Yarasheski, ... Proceedings of the National Academy of Sciences 108 (10), 4158-4163, 2011 | 362 | 2011 |
| Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome D Knights, KG Lassen, RJ Xavier Gut 62 (10), 1505-1510, 2013 | 325 | 2013 |
| Supervised classification of human microbiota D Knights, EK Costello, R Knight FEMS microbiology reviews 35 (2), 343-359, 2011 | 308 | 2011 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 254 | 2018 |
Rob KnightDirector, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSDVerified email at ucsd.edu
