Alejandro F. Villaverde
Alejandro F. Villaverde
Universidade de Vigo
Verified email at - Homepage
Cited by
Cited by
Reverse engineering and identification in systems biology: strategies, perspectives and challenges
AF Villaverde, JR Banga
Journal of the Royal Society Interface 11 (91), 20130505, 2014
Structural identifiability of dynamic systems biology models
AF Villaverde, A Barreiro, A Papachristodoulou
PLoS computational biology 12 (10), e1005153, 2016
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
JA Egea, D Henriques, T Cokelaer, AF Villaverde, JR Banga, ...
BMC Bioinformatics 15, 136, 2014
MIDER: network inference with mutual information distance and entropy reduction
AF Villaverde, J Ross, F Morán, JR Banga
PloS one 9 (5), e96732, 2014
Benchmarking optimization methods for parameter estimation in large kinetic models
AF Villaverde, F Fröhlich, D Weindl, J Hasenauer, JR Banga
Bioinformatics 35 (5), 830–838, 2019
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
A Gábor, AF Villaverde, JR Banga
BMC systems biology 11 (1), 1-16, 2017
Reset control for passive bilateral teleoperation
AF Villaverde, AB Blas, J Carrasco, AB Torrico
IEEE Transactions on Industrial Electronics 58 (7), 3037-3045, 2011
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology
AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ...
BMC systems biology 9 (1), 1-15, 2015
Observability and structural identifiability of nonlinear biological systems
AF Villaverde
Complexity 2019, 2019
Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models
AF Villaverde, N Tsiantis, JR Banga
Journal of the Royal Society Interface 16 (156), 20190043, 2019
On the relationship between sloppiness and identifiability
OT Chis, AF Villaverde, JR Banga, E Balsa-Canto
Mathematical biosciences 282, 147-161, 2016
A cooperative strategy for parameter estimation in large scale systems biology models
AF Villaverde, JA Egea, JR Banga
BMC systems biology 6 (1), 1-17, 2012
Reverse engineering cellular networks with information theoretic methods
AF Villaverde, J Ross, JR Banga
Cells 2 (2), 306-329, 2013
Structural identifiability and observability of compartmental models of the COVID-19 pandemic
G Massonis, JR Banga, AF Villaverde
Annual reviews in control 51, 441-459, 2021
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
D Henriques, AF Villaverde, M Rocha, J Saez-Rodriguez, JR Banga
PLoS computational biology 13 (2), e1005379, 2017
Identifiability of large nonlinear biochemical networks
AF Villaverde, A Barreiro
University of Kragujevac, 2016
PEtab—Interoperable specification of parameter estimation problems in systems biology
L Schmiester, Y Schälte, FT Bergmann, T Camba, E Dudkin, J Egert, ...
PLoS computational biology 17 (1), e1008646, 2021
Input-dependent structural identifiability of nonlinear systems
AF Villaverde, ND Evans, MJ Chappell, JR Banga
IEEE Control Systems Letters 3 (2), 272-277, 2018
Metabolic engineering with multi-objective optimization of kinetic models
AF Villaverde, S Bongard, K Mauch, E Balsa-Canto, JR Banga
Journal of biotechnology 222, 1-8, 2016
Global optimization in systems biology: stochastic methods and their applications
E Balsa-Canto, JR Banga, JA Egea, A Fernandez-Villaverde, ...
Advances in systems biology, 409-424, 2012
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