Alejandro F. Villaverde

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Julio R. Banga ( ORCID 0000-0002-42...Research Professor, MBG-CSIC, Pontevedra (Spain)Verified email at csic.es
Eva Balsa CantoIIM-CSICVerified email at iim.csic.es
Jose A. EgeaTenured Researcher, CEBAS-CSICVerified email at cebas.csic.es
Julio Saez RodriguezHeidelberg UniversityVerified email at bioquant.uni-heidelberg.de
David Saque HenriquesPost-Doctoral Researcher, IIM-CSICVerified email at iim.csic.es
Klaus MauchInsilico Biotechnology AGVerified email at insilico-biotechnology.com
Jan HasenauerUniversität BonnVerified email at uni-bonn.de
Gemma MassonisMisión Biológica de Galicia (CSIC)Verified email at csic.es
Federico MoranProfessor of Biochemistry, Universidad Complutense MadridVerified email at ucm.es
cesareo raimundezEscuela de Ingeniería Industrial, Universidad de VigoVerified email at uvigo.es
Antonis PapachristodoulouUniversity of OxfordVerified email at eng.ox.ac.uk
Thomas CokelaerInstitut PasteurVerified email at pasteur.fr
Kieran SmallboneMCISB / Mathematics / Computer Science, University of ManchesterVerified email at manchester.ac.uk
Fabian FröhlichFrancis Crick InstituteVerified email at crick.ac.uk
Joaquin CarrascoThe University of ManchesterVerified email at manchester.ac.uk
Johannes JaegerFreelance, associated with Complexity Science Hub (CSH) ViennaVerified email at univie.ac.at
Anton CrombachCentre Inria de LyonVerified email at inria.fr
Aidan MacNamaraSenior Data Scientist, BayerVerified email at bayer.com
Diana-Patricia DanciuPostdoctoral researcher, Heidelberg UniversityVerified email at math.uni-heidelberg.de
Neil EvansUniversity of WarwickVerified email at warwick.ac.uk

Alejandro F. Villaverde

Universidade de Vigo

Verified email at uvigo.gal - Homepage

control theory systems biology identifiability


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Reverse engineering and identification in systems biology: strategies, perspectives and challenges AF Villaverde, JR Banga Journal of the Royal Society Interface 11 (91), 20130505, 2014	274	2014
Structural identifiability of dynamic systems biology models AF Villaverde, A Barreiro, A Papachristodoulou PLoS computational biology 12 (10), e1005153, 2016	219	2016
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics JA Egea, D Henriques, T Cokelaer, AF Villaverde, JR Banga, ... BMC Bioinformatics 15, 136, 2014	166	2014
MIDER: network inference with mutual information distance and entropy reduction AF Villaverde, J Ross, F Morán, JR Banga PloS one 9 (5), e96732, 2014	131	2014
Benchmarking optimization methods for parameter estimation in large kinetic models AF Villaverde, F Fröhlich, D Weindl, J Hasenauer, JR Banga Bioinformatics 35 (5), 830–838, 2019	118	2019
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems A Gábor, AF Villaverde, JR Banga BMC systems biology 11 (1), 1-16, 2017	101	2017
Reset control for passive bilateral teleoperation AF Villaverde, AB Blas, J Carrasco, AB Torrico IEEE Transactions on Industrial Electronics 58 (7), 3037-3045, 2011	96	2011
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology AF Villaverde, D Henriques, K Smallbone, S Bongard, J Schmid, ... BMC systems biology 9 (1), 1-15, 2015	89	2015
Observability and structural identifiability of nonlinear biological systems AF Villaverde Complexity 2019, 2019	86	2019
Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models AF Villaverde, N Tsiantis, JR Banga Journal of the Royal Society Interface 16 (156), 20190043, 2019	79	2019
On the relationship between sloppiness and identifiability OT Chis, AF Villaverde, JR Banga, E Balsa-Canto Mathematical biosciences 282, 147-161, 2016	71	2016
A cooperative strategy for parameter estimation in large scale systems biology models AF Villaverde, JA Egea, JR Banga BMC systems biology 6 (1), 1-17, 2012	71	2012
Reverse engineering cellular networks with information theoretic methods AF Villaverde, J Ross, JR Banga Cells 2 (2), 306-329, 2013	66	2013
Structural identifiability and observability of compartmental models of the COVID-19 pandemic G Massonis, JR Banga, AF Villaverde Annual reviews in control 51, 441-459, 2021	54	2021
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models D Henriques, AF Villaverde, M Rocha, J Saez-Rodriguez, JR Banga PLoS computational biology 13 (2), e1005379, 2017	49	2017
Identifiability of large nonlinear biochemical networks AF Villaverde, A Barreiro University of Kragujevac, 2016	47	2016
PEtab—Interoperable specification of parameter estimation problems in systems biology L Schmiester, Y Schälte, FT Bergmann, T Camba, E Dudkin, J Egert, ... PLoS computational biology 17 (1), e1008646, 2021	46	2021
Input-dependent structural identifiability of nonlinear systems AF Villaverde, ND Evans, MJ Chappell, JR Banga IEEE Control Systems Letters 3 (2), 272-277, 2018	43	2018
Metabolic engineering with multi-objective optimization of kinetic models AF Villaverde, S Bongard, K Mauch, E Balsa-Canto, JR Banga Journal of biotechnology 222, 1-8, 2016	37	2016
Global optimization in systems biology: stochastic methods and their applications E Balsa-Canto, JR Banga, JA Egea, A Fernandez-Villaverde, ... Advances in systems biology, 409-424, 2012	32	2012

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