| CN: a consensus algorithm for inferring gene regulatory networks using the SORDER algorithm and conditional mutual information test R Aghdam, M Ganjali, X Zhang, C Eslahchi Molecular BioSystems 11 (3), 942-949, 2015 | 38 | 2015 |
| A neural network-based method for polypharmacy side effects prediction R Masumshah, R Aghdam, C Eslahchi BMC bioinformatics 22, 1-17, 2021 | 28 | 2021 |
| Using informative features in machine learning based method for COVID-19 drug repurposing R Aghdam, M Habibi, G Taheri Journal of cheminformatics 13 (1), 70, 2021 | 24 | 2021 |
| IPCA-CMI: an algorithm for inferring gene regulatory networks based on a combination of PCA-CMI and MIT score R Aghdam, M Ganjali, C Eslahchi PloS one 9 (4), e92600, 2014 | 23 | 2014 |
| A SARS-CoV-2 (COVID-19) biological network to find targets for drug repurposing M Habibi, G Taheri, R Aghdam Scientific reports 11 (1), 9378, 2021 | 16 | 2021 |
| The ability of different imputation methods to preserve the significant genes and pathways in cancer R Aghdam, T Baghfalaki, P Khosravi, E Saberi Ansari Genomics, Proteomics and Bioinformatics 15 (6), 396-404, 2017 | 11 | 2017 |
| LRC: A new algorithm for prediction of conformational B-cell epitopes using statistical approach and clustering method M Habibi, PK Bakhshi, R Aghdam Journal of immunological methods 427, 51-57, 2015 | 10 | 2015 |
| An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests H Mahmoodi, R Aghdam, C Eslahchi Scientific Reports 11 (1), 1-15, 2021 | 7 | 2021 |
| Significant random signatures reveals new biomarker for breast cancer E Saberi Ansar, C Eslahchii, M Rahimi, L Geranpayeh, M Ebrahimi, ... BMC Medical Genomics 12, 1-14, 2019 | 6 | 2019 |
| The structural properties of DNA regulate gene expression S Soltani, H Askari, N Ejlali, R Aghdam Molecular BioSystems 10 (2), 273-280, 2014 | 6 | 2014 |
| Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method R Aghdam, M Alijanpour, M Azadi, A Ebrahimi, C Eslahchi, A Rezvan International Journal of Biomathematics 9 (03), 1650040, 2016 | 5 | 2016 |
| A clustering approach for estimating parameters of a profile hidden Markov model R Aghdam, H Pezeshk, SA Malekpour, S Shemehsavar, C Eslahchi International Journal of Data Mining and Bioinformatics 8 (1), 66-82, 2013 | 5 | 2013 |
| Some node ordering methods for the K2 algorithm R Aghdam, VR Tabar, H Pezeshk Computational Intelligence, 2018 | 4 | 2018 |
| wpLogicNet: logic gate and structure inference in gene regulatory networks SA Malekpour, M Shahdoust, R Aghdam, M Sadeghi Bioinformatics 39 (2), btad072, 2023 | 3 | 2023 |
| Inferring gene regulatory networks by an order independent algorithm using incomplete data sets R Aghdam, M Ganjali, P Niloofar, C Eslahchi Journal of Applied Statistics 43 (5), 893-913, 2016 | 3 | 2016 |
| Nn-rnaloc: neural network-based model for prediction of mrna sub-cellular localization using distance-based sub-sequence profiles NS Babaiha, R Aghdam, S Ghiam, C Eslahchi Plos one 18 (9), e0258793, 2023 | 1 | 2023 |
| Removing the association of random gene sets and survival time in cancers with positive random bias using fixed-point gene set M Maghsoudi, R Aghdam, C Eslahchi Scientific Reports 13 (1), 8663, 2023 | 1 | 2023 |
| LSPC: An Algorithm for Inference of Gene Networks Using Bayesian Network MGCE Ali Ebrahimi, Rosa Aghdam, Parisa Niloofar Journal of Emerging Trends in Computing and Information Sciences 3 (5), 774-782, 2012 | 1 | 2012 |
| MiNAA: Microbiome Network Alignment Algorithm CSL Reed Nelson, Rosa Aghdam The journal of open source software, 2024 | | 2024 |
| Human limits in Machine Learning: Prediction of plant phenotypes using soil microbiome data R Aghdam, X Tang, S Shan, R Lankau, C Solís-Lemus arXiv preprint arXiv:2306.11157, 2023 | | 2023 |
Changiz EslahchiProfessor of algorithm in bioinformatics, Department of Computer Science, Shahid Beheshti UniversityVerified email at sbu.ac.ir
