| Choline ion interactions with DNA atoms explain unique stabilization of A–T base pairs in DNA duplexes: a microscopic view M Nakano, H Tateishi-Karimata, S Tanaka, N Sugimoto The Journal of Physical Chemistry B 118 (2), 379-389, 2014 | 73 | 2014 |
| Comparable stability of Hoogsteen and Watson–Crick base pairs in ionic liquid choline dihydrogen phosphate H Tateishi-Karimata, M Nakano, N Sugimoto Scientific reports 4 (1), 3593, 2014 | 46 | 2014 |
| Molecular dynamics simulation study on the structural stabilities of polyglutamine peptides H Ogawa, M Nakano, H Watanabe, EB Starikov, SM Rothstein, S Tanaka Computational biology and chemistry 32 (2), 102-110, 2008 | 45 | 2008 |
| Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory M Nakano, H Tateishi-Karimata, S Tanaka, F Tama, O Miyashita, ... Nucleic Acids Research 43 (21), 10114-10125, 2015 | 34 | 2015 |
| i-Motifs are more stable than G-quadruplexes in a hydrated ionic liquid H Tateishi-Karimata, M Nakano, S Pramanik, S Tanaka, N Sugimoto Chemical communications 51 (32), 6909-6912, 2015 | 32 | 2015 |
| Comparative characterization of short monomeric polyglutamine peptides by replica exchange molecular dynamics simulation M Nakano, H Watanabe, SM Rothstein, S Tanaka The journal of physical chemistry B 114 (20), 7056-7061, 2010 | 30 | 2010 |
| Single-particle XFEL 3D reconstruction of ribosome-size particles based on Fourier slice matching: Requirements to reach subnanometer resolution M Nakano, O Miyashita, S Jonic, A Tokuhisa, F Tama Journal of Synchrotron Radiation 25 (4), 1010-1021, 2018 | 18 | 2018 |
| Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory M Nakano, H Tateishi-Karimata, S Tanaka, F Tama, O Miyashita, ... Chemical Physics Letters 660, 250-255, 2016 | 18 | 2016 |
| Affinity of molecular ions for DNA structures is determined by solvent-accessible surface area M Nakano, H Tateishi-Karimata, S Tanaka, N Sugimoto The Journal of Physical Chemistry B 118 (32), 9583-9594, 2014 | 18 | 2014 |
| Study of the aggregation mechanism of polyglutamine peptides using replica exchange molecular dynamics simulations M Nakano, K Ebina, S Tanaka Journal of molecular modeling 19, 1627-1639, 2013 | 17 | 2013 |
| Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL M Nakano, O Miyashita, S Jonic, C Song, D Nam, Y Joti, F Tama Journal of synchrotron radiation 24 (4), 727-737, 2017 | 14 | 2017 |
| Molecular mechanics and all-electron fragment molecular orbital calculations on mutated polyglutamine peptides BMB Van Schouwen, M Nakano, H Watanabe, S Tanaka, HL Gordon, ... Journal of Molecular Structure: THEOCHEM 944 (1-3), 12-20, 2010 | 8 | 2010 |
| Mutation effects on structural stability of polyglutamine peptides by molecular dynamics simulation M Nakano, H Watanabe, EB Starikov, SM Rothstein, S Tanaka Interdisciplinary Sciences: Computational Life Sciences 1, 21-29, 2009 | 8 | 2009 |
| Classical density functional calculation of radial distribution functions of liquid water S Tanaka, M Nakano Chemical Physics 430, 18-22, 2014 | 7 | 2014 |
| Triplet correlations and bridge functions in classical density functional theory for liquid water S Tanaka, M Nakano Chemical Physics Letters 572, 38-43, 2013 | 3 | 2013 |
| Molecular size dependence on achievable resolution from XFEL single-particle 3D reconstruction M Nakano, O Miyashita, F Tama Structural Dynamics 10 (2), 2023 | 2 | 2023 |
| Three-dimensional structure determination of gold nanotriangles in solution using X-ray free-electron laser single-particle analysis M Nakano, O Miyashita, Y Joti, A Suzuki, H Mitomo, Y Niida, Y Yang, ... Optica 9 (7), 776-784, 2022 | 2 | 2022 |
| Parameter optimization for 3D-reconstruction from XFEL diffraction patterns based on Fourier slice matching M Nakano, O Miyashita, F Tama Biophysics and Physicobiology 16, 367-376, 2019 | 2 | 2019 |
| Structure determination using high-order spatial correlations in single-particle X-ray scattering W Zhao, O Miyashita, M Nakano, F Tama IUCrJ 11 (1), 2024 | | 2024 |
| Effects of bridge functions on radial distribution functions of liquid water S Tanaka, M Nakano Interdisciplinary Sciences: Computational Life Sciences 7, 152-156, 2015 | | 2015 |
