| Prospects for building the tree of life from large sequence databases AC Driskell, C Ané, JG Burleigh, MM McMahon, BC O'Meara, ... Science 306 (5699), 1172-1174, 2004 | 286 | 2004 |
| Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes MM McMahon, MJ Sanderson Systematic biology 55 (5), 818-836, 2006 | 193 | 2006 |
| Phylogenomics with incomplete taxon coverage: the limits to inference MJ Sanderson, MM McMahon, M Steel BMC Evolutionary Biology 10 (1), 155, 2010 | 139 | 2010 |
| Terraces in phylogenetic tree space MJ Sanderson, MM McMahon, M Steel Science 333 (6041), 448-450, 2011 | 137 | 2011 |
| Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat MJ Sanderson, D Copetti, A Búrquez, E Bustamante, JLM Charboneau, ... American Journal of Botany 102 (7), 1115-1127, 2015 | 126 | 2015 |
| Inferring angiosperm phylogeny from EST data with widespread gene duplication MJ Sanderson, MM McMahon BMC evolutionary biology 7 (1), S3, 2007 | 123 | 2007 |
| Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners PL Chang, BP Dilkes, M McMahon, L Comai, SV Nuzhdin Genome biology 11 (12), R125, 2010 | 101 | 2010 |
| Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti D Copetti, A Búrquez, E Bustamante, JLM Charboneau, KL Childs, ... Proceedings of the National Academy of Sciences 114 (45), 12003-12008, 2017 | 100 | 2017 |
| Divergence and Reticulation among Montane Populations of a Jumping Spider (Habronattus pugillis Griswold) W Maddison, M McMahon Systematic biology 49 (3), 400-421, 2000 | 94 | 2000 |
| Covarion structure in plastid genome evolution: a new statistical test C Ané, JG Burleigh, MM McMahon, MJ Sanderson Molecular Biology and Evolution 22 (4), 914-924, 2004 | 78 | 2004 |
| Phylogeny of Amorpheae (Fabaceae: Papilionoideae) M McMahon, L Hufford American Journal of Botany 91 (8), 1219-1230, 2004 | 67 | 2004 |
| The major clades of Loasaceae: phylogenetic analysis using the plastid matK and trnL‐trnF regions L Hufford, MM McMahon, AM Sherwood, G Reeves, MW Chase American Journal of Botany 90 (8), 1215-1228, 2003 | 66 | 2003 |
| Impacts of terraces on phylogenetic inference MJ Sanderson, MM McMahon, A Stamatakis, DJ Zwickl, M Steel Systematic biology 64 (5), 709-726, 2015 | 53 | 2015 |
| Evolution and development in the amorphoid clade (Amorpheae: Papilionoideae: Leguminosae): petal loss and dedifferentiation M McMahon, L Hufford International Journal of Plant Sciences 166 (3), 383-396, 2005 | 35 | 2005 |
| Diversity and evolution of a trait mediating ant–plant interactions: insights from extrafloral nectaries in Senna (Leguminosae) B Marazzi, E Conti, MJ Sanderson, MM McMahon, JL Bronstein Annals of botany 111 (6), 1263-1275, 2012 | 34 | 2012 |
| A phylogenetic analysis of Loasaceae subfamily Loasoideae based on plastid DNA sequences L Hufford, MM McMahon, R O’Quinn, ME Poston International Journal of Plant Sciences 166 (2), 289-300, 2005 | 34 | 2005 |
| EvoMiner: frequent subtree mining in phylogenetic databases A Deepak, D Fernández-Baca, S Tirthapura, MJ Sanderson, ... Knowledge and Information Systems 41 (3), 559-590, 2014 | 33 | 2014 |
| Developmental morphology and structural homology of corolla‐androecium synorganization in the tribe Amorpheae (Fabaceae: Papilionoideae) M McMahon, L Hufford American Journal of Botany 89 (12), 1884-1898, 2002 | 24 | 2002 |
| Phylogenetic relationships and floral evolution in the papilionoid legume clade Amorpheae MM McMahon Brittonia 57 (4), 397-411, 2005 | 23 | 2005 |
| Morphological evolution and systematics of Synthyris and Besseya (Veronicaceae): a phylogenetic analysis L Hufford, M McMahon Systematic botany 29 (3), 716-736, 2004 | 18 | 2004 |
