Obserwuj
Husen M. Umer
Tytuł
Cytowane przez
Cytowane przez
Rok
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
8972020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
357*2020
Reliability assessment of null allele detection: inconsistencies between and within different methods
MJ Dąbrowski, M Pilot, M Kruczyk, M Żmihorski, HM Umer, J Gliwicz
Molecular Ecology Resources 14 (2), 361-373, 2014
572014
A significant regulatory mutation burden at a high‐affinity position of the CTCF motif in gastrointestinal cancers
HM Umer, M Cavalli, MJ Dabrowski, K Diamanti, M Kruczyk, G Pan, ...
Human mutation 37 (9), 904-913, 2016
352016
Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases
M Cavalli, N Baltzer, HM Umer, J Grau, I Lemnian, G Pan, O Wallerman, ...
Scientific reports 9 (1), 1-14, 2019
242019
Peak Finder Metaserver-a novel application for finding peaks in ChIP-seq data
M Kruczyk, HM Umer, S Enroth, J Komorowski
BMC bioinformatics 14 (1), 1-7, 2013
172013
Maps of context-dependent putative regulatory regions and genomic signal interactions
K Diamanti, HM Umer, M Kruczyk, MJ Dąbrowski, M Cavalli, C Wadelius, ...
Nucleic acids research 44 (19), 9110-9120, 2016
92016
Proteogenomics of non-small cell lung cancer reveals molecular subtypes associated with specific therapeutic targets and immune-evasion mechanisms
J Lehtiö, T Arslan, I Siavelis, Y Pan, F Socciarelli, O Berkovska, HM Umer, ...
Nature Cancer 2 (11), 1224-1242, 2021
8*2021
Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides
HM Umer, E Audain, Y Zhu, J Pfeuffer, T Sachsenberg, J Lehtiö, ...
Bioinformatics, 2021
42021
Functional annotation of noncoding mutations in cancer
HM Umer, K Smolinska, J Komorowski, C Wadelius
Life science alliance 4 (9), 2021
32021
Therapeutic cancer vaccination with immunopeptidomics-discovered antigens confers protective antitumor efficacy
K Peltonen, S Feola, HM Umer, J Chiaro, G Mermelekas, E Ylösmäki, ...
Cancers 13 (14), 3408, 2021
32021
funMotifs: Tissue-specific transcription factor motifs
HM Umer, K Smolinska-Garbulowska, Z Khaliq, C Wadelius, ...
BioRxiv, 683722, 2019
32019
Visual Thinking in Entrepreneurship
A Hayati, HM Umer
Department of Business Studies, Uppsala University, 2018
22018
Proteogenomics refines the molecular classification of chronic lymphocytic leukemia
SA Herbst, M Vesterlund, AJ Helmboldt, R Jafari, I Siavelis, M Stahl, ...
bioRxiv, 2022
12022
A Peak-Finder Meta Server for ChIP-Seq Analysis
H Umer
12011
Glioblastoma stem cells express non-canonical proteins and exclusive mesenchymal-like or non-mesenchymal-like protein signatures
H Babačić, S Galardi, HM Umer, D Cardinali, S Pellegata, M Hellström, ...
bioRxiv, 2022
2022
Proteogenomic Subtyping of Chronic Lymphocytic Leukemia Identifies a Novel Poor Outcome Subgroup with a Distinct Drug Response Profile
SA Herbst, M Vesterlund, R Jafari, I Siavelis, M Stahl, E Schitter, ...
Blood 136, 10-11, 2020
2020
Proteogenomic analysis of relapsed acute myeloid leukemia in adults and children
S Stratmann, M Vesterlund, HM Umer, A Skaftason, MK Herlin, ...
2020
Production and Generation of Proteogenomics Databases using PyPGATK
HM Umer, Y Zhu, E Audain, J Lehtio, R Branca, Y Perez-Riverol
MOLECULAR & CELLULAR PROTEOMICS 18 (8), S61-S61, 2019
2019
Solar Energy in Entrepreneurship
A Hayati, HM Umer
Department of Business Studies, Uppsala University, 2018
2018
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