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Jonathan Badger
Jonathan Badger
Staff Scientist, National Cancer Institute
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
Human Microbiome Project Consortium
Nature 486 (7402), 207-14, 2012
85072012
A framework for human microbiome research
Human Microbiome Consortium
Nature. E-pub ahead of print. doi 10, 2012
1983*2012
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
C Bowler, AE Allen, JH Badger, J Grimwood, K Jabbari, A Kuo, ...
Nature 456 (7219), 239-244, 2008
17002008
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ...
Nature 390 (6658), 364-370, 1997
16931997
Comparative genomics of trypanosomatid parasitic protozoa
NM El-Sayed, PJ Myler, G Blandin, M Berriman, J Crabtree, G Aggarwal, ...
Science 309 (5733), 404-409, 2005
9392005
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
JM Cock, L Sterck, P Rouzé, D Scornet, AE Allen, G Amoutzias, ...
Nature 465 (7298), 617-621, 2010
8692010
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ...
Applied and environmental microbiology 75 (7), 2046-2056, 2009
8302009
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ...
PLoS biology 4 (9), e286, 2006
8002006
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ...
Science 328 (5981), 994-999, 2010
7762010
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
M Li, JH Badger, X Chen, S Kwong, P Kearney, H Zhang
Bioinformatics 17 (2), 149-154, 2001
6802001
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
AZ Worden, JH Lee, T Mock, P Rouzé, MP Simmons, AL Aerts, AE Allen, ...
Science 324 (5924), 268-272, 2009
6602009
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species
DE Fouts, EF Mongodin, RE Mandrell, WG Miller, DA Rasko, J Ravel, ...
PLoS biology 3 (1), e15, 2005
6452005
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ...
PLoS genetics 4 (4), e1000046, 2008
5392008
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
MA Van Den Berg, R Albang, K Albermann, JH Badger, JM Daran, ...
Nature biotechnology 26 (10), 1161-1168, 2008
5012008
Wild mouse gut microbiota promotes host fitness and improves disease resistance
SP Rosshart, BG Vassallo, D Angeletti, DS Hutchinson, AP Morgan, ...
Cell 171 (5), 1015-1028. e13, 2017
4892017
CRITICA: coding region identification tool invoking comparative analysis.
JH Badger, GJ Olsen
Molecular biology and evolution 16 (4), 512-524, 1999
4831999
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
PJ Haney, JH Badger, GL Buldak, CI Reich, CR Woese, GJ Olsen
Proceedings of the National Academy of Sciences 96 (7), 3578-3583, 1999
4051999
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
N Ziemert, S Podell, K Penn, JH Badger, E Allen, PR Jensen
PloS one 7 (3), e34064, 2012
3992012
Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice
DE Fouts, HL Tyler, RT DeBoy, S Daugherty, Q Ren, JH Badger, ...
PLoS genetics 4 (7), e1000141, 2008
3162008
Fecal microbiota transplant overcomes resistance to anti–PD-1 therapy in melanoma patients
D Davar, AK Dzutsev, JA McCulloch, RR Rodrigues, JM Chauvin, ...
Science 371 (6529), 595-602, 2021
2942021
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