| MEGARes: an antimicrobial resistance database for high throughput sequencing SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ... Nucleic acids research 45 (D1), D574-D580, 2017 | 193 | 2017 |
| Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ... Applied and Environmental Microbiology 82 (8), 2433-2443, 2016 | 87 | 2016 |
| Resistome diversity in cattle and the environment decreases during beef production NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ... Elife 5, e13195, 2016 | 78 | 2016 |
| Succinct colored de Bruijn graphs MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ... Bioinformatics 33 (20), 3181-3187, 2017 | 77 | 2017 |
| SEQuel: improving the accuracy of genome assemblies R Ronen, C Boucher, H Chitsaz, P Pevzner Bioinformatics 28 (12), i188-i196, 2012 | 75 | 2012 |
| Exploring non-touchscreen gestures for smartwatches SS Arefin Shimon, C Lutton, Z Xu, S Morrison-Smith, C Boucher, J Ruiz Proceedings of the 2016 chi conference on human factors in computing systems …, 2016 | 68 | 2016 |
| Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ... Scientific Reports 6 (1), 1-12, 2016 | 68 | 2016 |
| The SLOW GROWTH3 pentatricopeptide repeat protein is required for the splicing of mitochondrial NADH dehydrogenase subunit7 intron 2 in Arabidopsis WY Hsieh, JC Liao, CY Chang, T Harrison, C Boucher, MH Hsieh Plant Physiology 168 (2), 490-501, 2015 | 61 | 2015 |
| Variable-order de Bruijn graphs C Boucher, A Bowe, T Gagie, SJ Puglisi, K Sadakane 2015 data compression conference, 383-392, 2015 | 60 | 2015 |
| Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ... Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020 | 43 | 2020 |
| Misassembly detection using paired-end sequence reads and optical mapping data MD Muggli, SJ Puglisi, R Ronen, C Boucher Bioinformatics 31 (12), i80-i88, 2015 | 38 | 2015 |
| Efficient indexed alignment of contigs to optical maps MD Muggli, SJ Puglisi, C Boucher International Workshop on Algorithms in Bioinformatics, 68-81, 2014 | 35* | 2014 |
| MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ... Nucleic acids research 48 (D1), D561-D569, 2020 | 33 | 2020 |
| Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ... Microbiome 5 (1), 1-13, 2017 | 29 | 2017 |
| Targeted enrichment for pathogen detection and characterization in three felid species JS Lee, RS Mackie, T Harrison, B Shariat, T Kind, T Kehl, M Löchelt, ... Journal of clinical microbiology 55 (6), 1658-1670, 2017 | 24 | 2017 |
| Prefix-free parsing for building big BWTs C Boucher, T Gagie, A Kuhnle, B Langmead, G Manzini, T Mun Algorithms for Molecular Biology 14 (1), 1-15, 2019 | 22 | 2019 |
| Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ... Frontiers in microbiology 10, 1980, 2019 | 22 | 2019 |
| Building large updatable colored de Bruijn graphs via merging Bioinformatics, 2019 | 22* | 2019 |
| On the structure of small motif recognition instances C Boucher, DG Brown, S Durocher International Symposium on String Processing and Information Retrieval, 269-281, 2008 | 22 | 2008 |
| Efficient construction of a complete index for pan-genomics read alignment A Kuhnle, T Mun, C Boucher, T Gagie, B Langmead, G Manzini Journal of Computational Biology 27 (4), 500-513, 2020 | 21 | 2020 |
Noelle NoyesAssistant Professor, University of MinnesotaVerified email at umn.edu
