| RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015 | 118 | 2015 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 98 | 2017 |
| The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results GL Falchetto, D Coster, R Coelho, BD Scott, L Figini, D Kalupin, E Nardon, ... Nuclear Fusion 54 (4), 043018, 2014 | 74 | 2014 |
| RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014 | 44 | 2014 |
| New functionality of RNAComposer: application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016 | 32 | 2016 |
| INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... Journal of Grid Computing 16 (3), 381-408, 2018 | 27 | 2018 |
| RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018 | 27 | 2018 |
| MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22 (3), 457-473, 2014 | 23 | 2014 |
| New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16 (1), 276, 2015 | 19 | 2015 |
| Approaches to distributed execution of scientific workflows in kepler M P³óciennik, T ¯ok, I Altintas, J Wang, D Crawl, D Abramson, F Imbeaux, ... Fundamenta Informaticae 128 (3), 281-302, 2013 | 16 | 2013 |
| New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018 | 10 | 2018 |
| Distributed and cloud-based multi-model analytics experiments on large volumes of climate change data in the earth system grid federation eco-system S Fiore, M P³óciennik, C Doutriaux, C Palazzo, J Boutte, T ¯ok, D Elia, ... 2016 IEEE International Conference on Big Data (Big Data), 2911-2918, 2016 | 10 | 2016 |
| RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020 | 7 | 2020 |
| RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk Bioinformatics 35 (1), 152-155, 2019 | 7 | 2019 |
| Building the library of RNA 3D nucleotide conformations using the clustering approach T Zok, M Antczak, M Riedel, D Nebel, T Villmann, P Lukasiak, J Blazewicz, ... International Journal of Applied Mathematics and Computer Science 25 (3 …, 2015 | 7 | 2015 |
| First physics applications of the Integrated Tokamak Modelling (ITM-TF) tools to the MHD stability analysis of experimental data and ITER scenarios C Konz, W Zwingmann, F Osmanlic, B Guillerminet, F Imbeaux, P Huynh, ... EPS, O2, 2011 | 7 | 2011 |
| LCS-TA to identify similar fragments in RNA 3D structures J Wiedemann, T Zok, M Milostan, M Szachniuk BMC bioinformatics 18 (1), 456, 2017 | 6 | 2017 |
| Topology-based classification of tetrads and quadruplex structures M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk Bioinformatics 36 (4), 1129-1134, 2020 | 5 | 2020 |
| RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures M Antczak, T Zok, M Osowiecki, M Popenda, RW Adamiak, M Szachniuk BMC bioinformatics 19 (1), 1-11, 2018 | 5 | 2018 |
| User-Friendly frameworks for accessing computational resources B Palak, P Wolniewicz, M P³óciennik, M Owsiak, T ¯ok Building a National Distributed e-Infrastructure–PL-Grid, 191-204, 2012 | 5 | 2012 |
Marta SzachniukInstitute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
