Tomasz Zok

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Marta SzachniukInstitute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Maciej AntczakAssistant Professor at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Mariusz PopendaDr chemii, PANVerified email at ibch.poznan.pl
Jacek BlazewiczProfesor informatyki, Politechnika PoznanskaVerified email at cs.put.poznan.pl
Piotr LukasiakAssociate Professor, Institute of Computing Science, Poznan University of TechnologyVerified email at put.poznan.pl
Agnieszka RybarczykPoznan University of Techmology; Gdynia Maritime UniversityVerified email at cs.put.poznan.pl
Tomasz RatajczakAssistant at Institute of Computing Science, Poznan University of TechnologyVerified email at cs.put.poznan.pl
Jakub WiedemannPoznan University of TechnologyVerified email at cs.put.poznan.pl
Marcin MagnusInternational Institute of Molecular Mechanisms and Machines (IMol), PolandVerified email at imol.institute
Natalia SzóstakInstitute of Bioorganic Chemistry Polish Academy of SciencesVerified email at ibch.poznan.pl
Antonio Gómez-IglesiasIntelVerified email at intel.com
Thomas VillmannProfessor for Mathematics and Computational Intelligence, University of Applied Sciences MittweidaVerified email at hs-mittweida.de
David NebelCI Group MittweidaVerified email at hs-mittweida.de
Daniel CrawlSan Diego Supercomputer CenterVerified email at sdsc.edu
Ilkay AltintasSDSC/UCSDVerified email at sdsc.edu
Jianwu WangAssociate Professor of Data Science at University of Maryland Baltimore CountyVerified email at umbc.edu
David AbramsonUniversity of QueenslandVerified email at monash.edu
Miguel CaballerResearcher, Universitat Politècnica de ValènciaVerified email at upv.es
Prof. Roberto Barbera, Ph.D.University of Catania and INFN - ItalyVerified email at ct.infn.it
Marco Fargetta, PhDINFNVerified email at ct.infn.it

Tomasz Zok

Poznan University of Technology & Poznan Supercomputing and Networking Center

Verified email at cs.put.poznan.pl - Homepage

Computer Science Bioinformatics


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RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015	147	2015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017	146	2017
The European Integrated Tokamak Modelling (ITM) effort: achievements and first physics results GL Falchetto, D Coster, R Coelho, BD Scott, L Figini, D Kalupin, E Nardon, ... Nuclear Fusion 54 (4), 043018, 2014	89	2014
New functionality of RNAComposer: application to shape the axis of miR160 precursor structure M Antczak, M Popenda, T Zok, J Sarzynska, T Ratajczak, K Tomczyk, ... Acta Biochimica Polonica 63 (4), 737-744, 2016	87	2016
RNApdbee 2.0: multifunctional tool for RNA structure annotation T Zok, M Antczak, M Zurkowski, M Popenda, J Blazewicz, RW Adamiak, ... Nucleic acids research 46 (W1), W30-W35, 2018	62	2018
RNApdbee—a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs M Antczak, T Zok, M Popenda, P Lukasiak, RW Adamiak, J Blazewicz, ... Nucleic acids research 42 (W1), W368-W372, 2014	59	2014
INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... Journal of Grid Computing 16 (3), 381-408, 2018	53	2018
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... RNA 26 (8), 982-995, 2020	46	2020
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools M Magnus, M Antczak, T Zok, J Wiedemann, P Lukasiak, Y Cao, ... Nucleic acids research 48 (2), 576-588, 2020	29	2020
New in silico approach to assessing RNA secondary structures with non-canonical base pairs A Rybarczyk, N Szostak, M Antczak, T Zok, M Popenda, R Adamiak, ... BMC bioinformatics 16 (1), 1-12, 2015	28	2015
MCQ4Structures to compute similarity of molecule structures T Zok, M Popenda, M Szachniuk Central European Journal of Operations Research 22 (3), 457-473, 2014	26	2014
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation M Antczak, M Popenda, T Zok, M Zurkowski, RW Adamiak, M Szachniuk Bioinformatics 34 (8), 1304-1312, 2018	22	2018
Approaches to distributed execution of scientific workflows in Kepler M Płóciennik, T Żok, I Altintas, J Wang, D Crawl, D Abramson, F Imbeaux, ... Fundamenta Informaticae 128 (3), 281-302, 2013	21	2013
Topology-based classification of tetrads and quadruplex structures M Popenda, J Miskiewicz, J Sarzynska, T Zok, M Szachniuk Bioinformatics 36 (4), 1129-1134, 2020	13	2020
RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs M Antczak, M Zablocki, T Zok, A Rybarczyk, J Blazewicz, M Szachniuk Bioinformatics 35 (1), 152-155, 2019	11	2019
First physics applications of the Integrated Tokamak Modelling (ITM-TF) tools to the MHD stability analysis of experimental data and ITER scenarios C Konz, W Zwingmann, F Osmanlic, B Guillerminet, F Imbeaux, P Huynh, ... 38th EPS Conference on Plasma Physics, 2011	11	2011
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures M Antczak, T Zok, M Osowiecki, M Popenda, RW Adamiak, M Szachniuk BMC bioinformatics 19 (1), 1-11, 2018	10	2018
Distributed and cloud-based multi-model analytics experiments on large volumes of climate change data in the earth system grid federation eco-system S Fiore, M Płóciennik, C Doutriaux, C Palazzo, J Boutte, T Żok, D Elia, ... 2016 IEEE International Conference on Big Data (Big Data), 2911-2918, 2016	10	2016
Building the library of RNA 3D nucleotide conformations using the clustering approach T Zok, M Antczak, M Riedel, D Nebel, T Villmann, P Lukasiak, J Blazewicz, ... International Journal of Applied Mathematics and Computer Science 25 (3 …, 2015	9	2015
ElTetrado: a tool for identification and classification of tetrads and quadruplexes T Zok, M Popenda, M Szachniuk BMC bioinformatics 21 (1), 1-7, 2020	8	2020

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