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Thomas Gingeras
Thomas Gingeras
Professor of Functional Genomics, Cold Spring Harbor Laboratory
Zweryfikowany adres z cshl.edu - Strona główna
Tytuł
Cytowane przez
Cytowane przez
Rok
STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
255442013
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
119942012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
56472007
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
47562012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
45442012
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
36302005
High density synthetic oligonucleotide arrays
RJ Lipshutz, S Fodor, TR Gingeras, DJ Lockhart
Nature genetics 21 (1), 20-24, 1999
33031999
CD127 expression inversely correlates with FoxP3 and suppressive function of human CD4+ T reg cells
W Liu, AL Putnam, Z Xu-Yu, GL Szot, MR Lee, S Zhu, PA Gottlieb, ...
The Journal of experimental medicine 203 (7), 1701-1711, 2006
31902006
RNA maps reveal new RNA classes and a possible function for pervasive transcription
P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ...
Science 316 (5830), 1484-1488, 2007
26592007
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium Overall coordination (data analysis coordination ...
Nature 489 (7414), 57-74, 2012
25932012
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, L Pachter
Science 306 (5696), 636-640, 2004
20992004
Genomic maps and comparative analysis of histone modifications in human and mouse
BE Bernstein, M Kamal, K Lindblad-Toh, S Bekiranov, DK Bailey, ...
Cell 120 (2), 169-181, 2005
17402005
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
15752014
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
15402011
Genome-wide analysis of estrogen receptor binding sites
JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ...
Nature genetics 38 (11), 1289-1297, 2006
15362006
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
J Cheng, P Kapranov, J Drenkow, S Dike, S Brubaker, S Patel, J Long, ...
science 308 (5725), 1149-1154, 2005
14812005
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
14452014
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, ...
Cell 116 (4), 499-509, 2004
14102004
Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
G Li, X Ruan, RK Auerbach, KS Sandhu, M Zheng, P Wang, HM Poh, ...
Cell 148 (1-2), 84-98, 2012
12162012
Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication.
JC Guatelli, KM Whitfield, DY Kwoh, KJ Barringer, DD Richman, ...
Proceedings of the National Academy of Sciences 87 (5), 1874-1878, 1990
12021990
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