Timothy G Vaughan

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Alexei J. DrummondProfessor of Computational Biology, University of AucklandZweryfikowany adres z cs.auckland.ac.nz
Tanja StadlerETH ZurichZweryfikowany adres z env.ethz.ch
Denise KühnertMax Planck Institute for the Science of Human HistoryZweryfikowany adres z shh.mpg.de
Joëlle Barido-SottaniIBENS, ENS PSLZweryfikowany adres z bio.ens.psl.eu
Chieh-Hsi WuLecturer in Statistics, University of SouthamptonZweryfikowany adres z soton.ac.uk
David A RasmussenNorth Carolina State UniversityZweryfikowany adres z ncsu.edu
Peter D. DrummondProfessor of Theoretical Physics, Swinburne University of TechnologyZweryfikowany adres z swin.edu.au
Sebastian DucheneAustralian Research Council Future fellow and NHMRC EL2 fellow, University of MelbourneZweryfikowany adres z unimelb.edu.au
Joseph HeledAuckland UniversityZweryfikowany adres z cs.auckland.ac.nz
Remco BouckaertZweryfikowany adres z cs.auckland.ac.nz
Andrew RambautProfessor of Molecular Evolution, University of EdinburghZweryfikowany adres z ed.ac.uk
Dong (Walter) XieDepartment of Computer Science, University of AucklandZweryfikowany adres z cs.auckland.ac.nz
Marc A. SuchardProfessor, University of California, Los AngelesZweryfikowany adres z ucla.edu
Nicola Felix MüllerPostdoctoral Researcher at the Fred Hutchinson Cancer Research Center, SeattleZweryfikowany adres z fredhutch.org
Huw Alexander OgilvieRice UniversityZweryfikowany adres z rice.edu
Sarah NadeauPhD Student, ETH ZurichZweryfikowany adres z bsse.ethz.ch
Chi ZhangInstitute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of SciencesZweryfikowany adres z ivpp.ac.cn
Louis du PlessisUniversity of OxfordZweryfikowany adres z zoo.ox.ac.uk
Fábio Kuriki MendesPostdoctoral fellow, Washington University in St. LouisZweryfikowany adres z wustl.edu
Alexandra "Sasha" GavryushkinaPostdoctoral fellow at Canterbury UniversityZweryfikowany adres z canterbury.ac.nz

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Timothy G Vaughan

Department of Biosystems Science and Engineering, ETH Zürich, Switzerland

Zweryfikowany adres z bsse.ethz.ch

Phylogenetics Phylodynamics Bayesian Statistics Computational Biology


Tytuł Sortuj wg cytatów Sortuj wg roku Sortuj wg tytułu	Cytowane przez Cytowane przez	Rok
BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS computational biology 10 (4), e1003537, 2014	5584	2014
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019	2037	2019
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020 EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ... Nature 595 (7869), 707-712, 2021	468	2021
Phylodynamics with migration: a computational framework to quantify population structure from genomic data D Kühnert, T Stadler, TG Vaughan, AJ Drummond Molecular biology and evolution 33 (8), 2102-2116, 2016	124	2016
Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model D Kühnert, T Stadler, TG Vaughan, AJ Drummond Journal of the Royal Society Interface 11 (94), 20131106, 2014	123	2014
Efficient Bayesian inference under the structured coalescent TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond Bioinformatics 30 (16), 2272-2279, 2014	120	2014
A Bayesian model predicts the response of axons to molecular gradients D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ... Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009	112	2009
Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond Physical review letters 106 (12), 120405, 2011	100	2011
Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018	89	2018
The origin and early spread of SARS-CoV-2 in Europe SA Nadeau, TG Vaughan, J Scire, JS Huisman, T Stadler Proceedings of the National Academy of Sciences 118 (9), e2012008118, 2021	84	2021
IcyTree: rapid browser-based visualization for phylogenetic trees and networks TG Vaughan Bioinformatics 33 (15), 2392-2394, 2017	84	2017
Axon guidance by growth-rate modulation D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ... Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010	79	2010
Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft J Scire, SA Nadeau, T Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ... Swiss medical weekly 150 (19-20), w20271, 2020	70	2020
A stochastic simulator of birth–death master equations with application to phylodynamics TG Vaughan, AJ Drummond Molecular biology and evolution 30 (6), 1480-1493, 2013	60	2013
Estimating epidemic incidence and prevalence from genomic data TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ... Molecular Biology and Evolution, msz106, 2019	44	2019
Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ... Molecular Ecology 24 (23), 5813-5828, 2015	42	2015
Inferring ancestral recombination graphs from bacterial genomic data TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French Genetics 205 (2), 857-870, 2017	39	2017
A multitype birth–death model for Bayesian inference of lineage-specific birth and death rates J Barido-Sottani, TG Vaughan, T Stadler Systematic biology 69 (5), 973-986, 2020	37	2020
Entanglement, number fluctuations and optimized interferometric phase measurement QY He, TG Vaughan, PD Drummond, MD Reid New Journal of Physics 14 (9), 093012, 2012	36	2012
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics? T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ... Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015	35	2015

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