| An all‐atom structure‐based potential for proteins: bridging minimal models with all‐atom empirical forcefields PC Whitford, JK Noel, S Gosavi, A Schug, KY Sanbonmatsu, JN Onuchic Proteins: Structure, Function, and Bioinformatics 75 (2), 430-441, 2009 | 404 | 2009 |
| SMOG@ ctbp: simplified deployment of structure-based models in GROMACS JK Noel, PC Whitford, KY Sanbonmatsu, JN Onuchic Nucleic acids research 38 (suppl_2), W657-W661, 2010 | 346 | 2010 |
| SMOG 2: a versatile software package for generating structure-based models JK Noel, M Levi, M Raghunathan, H Lammert, RL Hayes, JN Onuchic, ... PLoS computational biology 12 (3), e1004794, 2016 | 276 | 2016 |
| The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function JK Noel, PC Whitford, JN Onuchic The Journal of Physical Chemistry B 116 (29), 8692-8702, 2012 | 238 | 2012 |
| Chaos in low-dimensional Lotka–Volterra models of competition JA Vano, JC Wildenberg, MB Anderson, JK Noel, JC Sprott Nonlinearity 19 (10), 2391, 2006 | 192 | 2006 |
| Slipknotting upon native-like loop formation in a trefoil knot protein JK Noel, JI Sułkowska, JN Onuchic Proceedings of the National Academy of Sciences 107 (35), 15403-15408, 2010 | 127 | 2010 |
| Energy landscape of knotted protein folding JI Sułkowska, JK Noel, JN Onuchic Proceedings of the National Academy of Sciences 109 (44), 17783-17788, 2012 | 114 | 2012 |
| Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1 K Faelber, L Dietrich, JK Noel, F Wollweber, AK Pfitzner, A Mühleip, ... Nature 571 (7765), 429-433, 2019 | 105 | 2019 |
| Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch RL Hayes, JK Noel, U Mohanty, PC Whitford, SP Hennelly, JN Onuchic, ... Journal of the American Chemical Society 134 (29), 12043-12053, 2012 | 98 | 2012 |
| Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily J Liu, M Tassinari, DP Souza, S Naskar, JK Noel, O Bohuszewicz, M Buck, ... Cell 184 (14), 3660-3673. e18, 2021 | 81 | 2021 |
| How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome JK Noel, PC Whitford Nature communications 7 (1), 13314, 2016 | 72 | 2016 |
| Knotting a protein in explicit solvent JK Noel, JN Onuchic, JI Sulkowska The Journal of Physical Chemistry Letters 4 (21), 3570-3573, 2013 | 71 | 2013 |
| The many faces of structure-based potentials: from protein folding landscapes to structural characterization of complex biomolecules JK Noel, JN Onuchic Computational Modeling of Biological Systems: From Molecules to Pathways, 31-54, 2012 | 71 | 2012 |
| Coexistence and chaos in complex ecologies JC Sprott, JA Vano, JC Wildenberg, MB Anderson, JK Noel Physics Letters A 335 (2-3), 207-212, 2005 | 68 | 2005 |
| Generalized Manning condensation model captures the RNA ion atmosphere RL Hayes, JK Noel, A Mandic, PC Whitford, KY Sanbonmatsu, U Mohanty, ... Physical review letters 114 (25), 258105, 2015 | 64 | 2015 |
| Order and disorder control the functional rearrangement of influenza hemagglutinin X Lin, NR Eddy, JK Noel, PC Whitford, Q Wang, J Ma, JN Onuchic Proceedings of the National Academy of Sciences 111 (33), 12049-12054, 2014 | 61 | 2014 |
| Interdomain contacts control native state switching of RfaH on a dual-funneled landscape CA Ramírez-Sarmiento, JK Noel, SL Valenzuela, I Artsimovitch PLoS computational biology 11 (7), e1004379, 2015 | 56 | 2015 |
| Knotting pathways in proteins JI Sułkowska, JK Noel, CA Ramírez-Sarmiento, EJ Rawdon, KC Millett, ... Biochemical Society Transactions 41 (2), 523-527, 2013 | 53 | 2013 |
| Capturing transition paths and transition states for conformational rearrangements in the ribosome JK Noel, J Chahine, VBP Leite, PC Whitford Biophysical journal 107 (12), 2881-2890, 2014 | 49 | 2014 |
| Pierced lasso bundles are a new class of knot-like motifs E Haglund, JI Sulkowska, JK Noel, H Lammert, JN Onuchic, PA Jennings PLoS computational biology 10 (6), e1003613, 2014 | 49 | 2014 |
