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Michal Wojciech Szczesniak
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A survey of best practices for RNA-seq data analysis
A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ...
Genome biology 17, 1-19, 2016
30422016
CANTATAdb: a collection of plant long non-coding RNAs
MW Szcześniak, W Rosikiewicz, I Makałowska
Plant and Cell Physiology 57 (1), e8-e8, 2016
1542016
lncRNA-RNA interactions across the human transcriptome
MW Szcześniak, I Makałowska
PloS one 11 (3), e0150353, 2016
932016
HuntMi: an efficient and taxon-specific approach in pre-miRNA identification
A Gudyś, MW Szcześniak, M Sikora, I Makałowska
BMC bioinformatics 14, 1-10, 2013
892013
Collagen synthesis disruption and downregulation of core elements of TGF-β, Hippo, and Wnt pathways in keratoconus corneas
M Kabza, JA Karolak, M Rydzanicz, MW Szcześniak, DM Nowak, ...
European Journal of Human Genetics 25 (5), 582-590, 2017
832017
miRNEST 2.0: a database of plant and animal microRNAs
MW Szcześniak, I Makałowska
Nucleic acids research 42 (D1), D74-D77, 2014
782014
CANTATAdb 2.0: expanding the collection of plant long noncoding RNAs
MW Szcześniak, O Bryzghalov, J Ciomborowska-Basheer, I Makałowska
Plant Long Non-Coding RNAs: Methods and Protocols, 415-429, 2019
772019
miRNEST database: an integrative approach in microRNA search and annotation
MW Szcześniak, S Deorowicz, J Gapski, Ł Kaczyński, I Makałowska
Nucleic acids research 40 (D1), D198-D204, 2012
642012
Natural antisense transcripts in diseases: From modes of action to targeted therapies
E Wanowska, MR Kubiak, W Rosikiewicz, I Makałowska, MW Szcześniak
Wiley Interdisciplinary Reviews: RNA 9 (2), e1461, 2018
572018
ERISdb: a database of plant splice sites and splicing signals
MW Szcześniak, M Kabza, R Pokrzywa, A Gudyś, I Makałowska
Plant and Cell Physiology 54 (2), e10-e10, 2013
562013
Primate and rodent specific intron gains and the origin of retrogenes with splice variants
MW Szcześniak, J Ciomborowska, W Nowak, IB Rogozin, I Makałowska
Molecular Biology and Evolution 28 (1), 33-37, 2011
562011
mirEX: a platform for comparative exploration of plant pri-miRNA expression data
D Bielewicz, J Dolata, A Zielezinski, S Alaba, B Szarzynska, ...
Nucleic acids research 40 (D1), D191-D197, 2012
522012
Identification of apple miRNAs and their potential role in fire blight resistance
E Kaja, MW Szcześniak, PJ Jensen, MJ Axtell, T McNellis, I Makałowska
Tree Genetics & Genomes 11, 1-11, 2015
322015
Long-term waterlogging as factor contributing to hypoxia stress tolerance enhancement in cucumber: Comparative transcriptome analysis of waterlogging sensitive and tolerant …
K Kęska, MW Szcześniak, I Makałowska, M Czernicka
Genes 12 (2), 189, 2021
312021
SyntDB: defining orthologues of human long noncoding RNAs across primates
O Bryzghalov, MW Szcześniak, I Makałowska
Nucleic acids research 48 (D1), D238-D245, 2020
232020
Sequence-non-specific effects generated by various types of RNA interference triggers
M Olejniczak, MO Urbanek, E Jaworska, L Witucki, MW Szczesniak, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (2), 306-314, 2016
222016
siRNA release from pri-miRNA scaffolds is controlled by the sequence and structure of RNA
P Galka-Marciniak, M Olejniczak, J Starega-Roslan, MW Szczesniak, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (4), 639-649, 2016
182016
MEF2C shapes the microtranscriptome during differentiation of skeletal muscles
A Piasecka, M Sekrecki, MW Szcześniak, K Sobczak
Scientific Reports 11 (1), 3476, 2021
172021
KTCNlncDB—a first platform to investigate lncRNAs expressed in human keratoconus and non-keratoconus corneas
MW Szcześniak, M Kabza, JA Karolak, M Rydzanicz, DM Nowak, ...
Database 2017, baw168, 2017
172017
Waterlogging-Stress-Responsive LncRNAs, Their Regulatory Relationships with miRNAs and Target Genes in Cucumber (Cucumis sativus L.)
K Kęska, MW Szcześniak, A Adamus, M Czernicka
International Journal of Molecular Sciences 22 (15), 8197, 2021
162021
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