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Fabian J Theis
Fabian J Theis
Helmholtz Munich, Technical University of Munich
Zweryfikowany adres z helmholtz-muenchen.de - Strona główna
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SCANPY: large-scale single-cell gene expression data analysis
FA Wolf, P Angerer, FJ Theis
Genome biology 19, 1-5, 2018
26292018
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
W Sungnak, N Huang, C Bécavin, M Berg, R Queen, M Litvinukova, ...
Nature medicine 26 (5), 681-687, 2020
22822020
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
19722020
The human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
15452017
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ...
Nature biotechnology 33 (2), 155-160, 2015
10622015
Current best practices in single‐cell RNA‐seq analysis: a tutorial
MD Luecken, FJ Theis
Molecular systems biology 15 (6), e8746, 2019
10312019
An atlas of genetic influences on human blood metabolites
SY Shin, EB Fauman, AK Petersen, J Krumsiek, R Santos, J Huang, ...
Nature genetics 46 (6), 543-550, 2014
9702014
Generalizing RNA velocity to transient cell states through dynamical modeling
V Bergen, M Lange, S Peidli, FA Wolf, FJ Theis
Nature biotechnology 38 (12), 1408-1414, 2020
9492020
Diffusion pseudotime robustly reconstructs lineage branching
L Haghverdi, M Büttner, FA Wolf, F Buettner, FJ Theis
Nature methods 13 (10), 845-848, 2016
9152016
Severe COVID-19 is marked by a dysregulated myeloid cell compartment
J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ...
Cell 182 (6), 1419-1440. e23, 2020
9052020
Genome-wide association analyses identify 18 new loci associated with serum urate concentrations
A Köttgen, E Albrecht, A Teumer, V Vitart, J Krumsiek, C Hundertmark, ...
Nature genetics 45 (2), 145-154, 2013
7742013
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
FA Wolf, FK Hamey, M Plass, J Solana, JS Dahlin, B Göttgens, ...
Genome biology 20, 1-9, 2019
7032019
Deep learning: new computational modelling techniques for genomics
G Eraslan, Ž Avsec, J Gagneur, FJ Theis
Nature Reviews Genetics 20 (7), 389-403, 2019
6752019
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
5882020
Single-cell RNA-seq denoising using a deep count autoencoder
G Eraslan, LM Simon, M Mircea, NS Mueller, FJ Theis
Nature communications 10 (1), 390, 2019
5742019
A cellular census of human lungs identifies novel cell states in health and in asthma
FA Vieira Braga, G Kar, M Berg, OA Carpaij, K Polanski, LM Simon, ...
Nature medicine 25 (7), 1153-1163, 2019
5442019
Diffusion maps for high-dimensional single-cell analysis of differentiation data
L Haghverdi, F Buettner, FJ Theis
Bioinformatics 31 (18), 2989-2998, 2015
5342015
Hypergraphs and cellular networks
S Klamt, UU Haus, F Theis
PLoS computational biology 5 (5), e1000385, 2009
4782009
Sparse component analysis and blind source separation of underdetermined mixtures
P Georgiev, F Theis, A Cichocki
IEEE Transactions on Neural Networks 16 (4), 993, 2005
4492005
destiny: diffusion maps for large-scale single-cell data in R
P Angerer, L Haghverdi, M Büttner, FJ Theis, C Marr, F Buettner
Bioinformatics 32 (8), 1241-1243, 2016
4352016
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