| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017 | 182 | 2017 |
| Theory and modeling of RNA structure and interactions with metal ions and small molecules LZ Sun, D Zhang, SJ Chen Annual review of biophysics 46, 227-246, 2017 | 110 | 2017 |
| RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ... Rna 26 (8), 982-995, 2020 | 104 | 2020 |
| Cas9-specific immune responses compromise local and systemic AAV CRISPR therapy in multiple dystrophic canine models CH Hakim, SRP Kumar, DO Pérez-López, NB Wasala, D Zhang, Y Yue, ... Nature communications 12 (1), 6769, 2021 | 85 | 2021 |
| Unified energetics analysis unravels SpCas9 cleavage activity for optimal gRNA design D Zhang, T Hurst, D Duan, SJ Chen Proceedings of the National Academy of Sciences 116 (18), 8693-8698, 2019 | 56 | 2019 |
| Nanopore electric snapshots of an RNA tertiary folding pathway X Zhang, D Zhang, C Zhao, K Tian, R Shi, X Du, AJ Burcke, J Wang, ... Nature communications 8 (1), 1458, 2017 | 53 | 2017 |
| IsRNA: An iterative simulated reference state approach to modeling correlated interactions in RNA folding D Zhang, SJ Chen Journal of chemical theory and computation 14 (4), 2230-2239, 2018 | 51 | 2018 |
| IsRNA1: De Novo Prediction and Blind Screening of RNA 3D Structures D Zhang, J Li, SJ Chen Journal of chemical theory and computation 17 (3), 1842-1857, 2021 | 36 | 2021 |
| Local coil–helix transition of semiflexible polymers confined in spheres Z Yang, D Zhang, L Zhang, C Hongping, H Liang Soft Matter 7 (15), 6836-6843, 2011 | 35 | 2011 |
| Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer J Ptacek, D Zhang, L Qiu, S Kruspe, L Motlova, P Kolenko, Z Novakova, ... Nucleic Acids Research 48 (19), 11130-11145, 2020 | 25 | 2020 |
| Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase PDM Nguyen, J Zheng, TJ Gremminger, L Qiu, D Zhang, S Tuske, ... Nucleic Acids Research 48 (5), 2709–2722, 2020 | 24 | 2020 |
| Entropic interactions in semiflexible polymer nanocomposite melts Y Jiang, D Zhang, L He, L Zhang The Journal of Physical Chemistry B 120 (3), 572-582, 2016 | 20 | 2016 |
| Ordered regular pentagons for semiflexible polymers on soft elastic shells D Zhang, A Chai, X Wen, L He, L Zhang, H Liang Soft Matter 8 (7), 2152-2158, 2012 | 19 | 2012 |
| Phase separation and crystallization of binary nanoparticles induced by polymer brushes D Zhang, Y Jiang, X Wen, L Zhang Soft Matter 9 (6), 1789-1797, 2013 | 15 | 2013 |
| Modeling Noncanonical RNA Base Pairs by a Coarse-Grained IsRNA2 Model D Zhang, SJ Chen, R Zhou The Journal of Physical Chemistry B 125 (43), 11907–11915, 2021 | 14 | 2021 |
| Ordered structures of diblock nanorods induced by diblock copolymers A Chai, D Zhang, Y Jiang, L He, L Zhang The Journal of Chemical Physics 139 (10), 2013 | 13 | 2013 |
| Conformations and migration behaviors of confined semiflexible polymers under poiseuille flow X Wen, D Zhang, L Zhang Polymer 53 (3), 873-880, 2012 | 13 | 2012 |
| Processes of DNA condensation induced by multivalent cations: Approximate annealing experiments and molecular dynamics simulations AH Chai, SY Ran, D Zhang, YW Jiang, GC Yang, LX Zhang Chinese Physics B 22 (9), 098701, 2013 | 12 | 2013 |
| Helical conformations of semiflexible polymers confined between two concentric cylinders D Zhang, Z Yang, X Wen, Z Xiang, L He, S Ran, L Zhang The Journal of Physical Chemistry B 115 (49), 14333-14340, 2011 | 12 | 2011 |
| Computational pipeline for reference-free comparative analysis of RNA 3D structures applied to SARS-CoV-2 UTR models J Gumna, M Antczak, RW Adamiak, JM Bujnicki, SJ Chen, F Ding, ... International Journal of Molecular Sciences 23 (17), 9630, 2022 | 11 | 2022 |
Shi-Jie ChenUniversity of Missouri-ColumbiaVerified email at missouri.edu
