| Structural basis for high-affinity fluorophore binding and activation by RNA Mango RJ Trachman III, NA Demeshkina, MWL Lau, SSS Panchapakesan, ... Nature chemical biology 13 (7), 807, 2017 | 117 | 2017 |
| Structure and functional reselection of the Mango-III fluorogenic RNA aptamer RJ Trachman, A Autour, SCY Jeng, A Abdolahzadeh, A Andreoni, ... Nature Chemical Biology 15 (5), 472, 2019 | 99 | 2019 |
| Crystal structures of the Mango-II RNA aptamer reveal heterogeneous fluorophore binding and guide engineering of variants with improved selectivity and brightness. R Trachman, A Abdolahzadeh, A Andreoni, R Cojocaru, JR Knutson, ... Biochemistry, 2018 | 55 | 2018 |
| Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers RJ Trachman, AR Ferré-D'Amaré Quarterly Reviews of Biophysics 52, 2019 | 48 | 2019 |
| Structural principles of fluorescent RNA aptamers RJ Trachman III, L Truong, AR Ferré-D'Amaré Trends in pharmacological sciences 38 (10), 928-939, 2017 | 47 | 2017 |
| Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET SCY Jeng, RJ Trachman, F Weissenboeck, L Truong, KA Link, ... RNA 27 (4), 433-444, 2021 | 29 | 2021 |
| Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair RJ Trachman III, R Cojocaru, D Wu, G Piszczek, M Ryckelynck, PJ Unrau, ... Structure 28 (7), 776-785. e3, 2020 | 24 | 2020 |
| Divalent ion competition reveals reorganization of an RNA ion atmosphere upon folding RJ Trachman III, DE Draper Nucleic acids research 45 (8), 4733-4742, 2017 | 18 | 2017 |
| Comparison of Interactions of Diamine and Mg2+ with RNA Tertiary Structures: Similar versus Differential Effects on the Stabilities of Diverse RNA Folds RJ Trachman III, DE Draper Biochemistry 52 (34), 5911-5919, 2013 | 16 | 2013 |
| A divalent cation-dependent variant of the glmS ribozyme with stringent Ca2+ selectivity co-opts a pre-existing non-specific metal ion binding site MWL Lau, RJ Trachman, AR Ferré-D'Amaré Rna, rna. 059824.116, 2016 | 15 | 2016 |
| Co-crystal structure of the iMango-III fluorescent RNA aptamer using an X-ray free-electron laser RJ Trachman, JR Stagno, C Conrad, CP Jones, P Fischer, A Meents, ... Acta Crystallographica Section F: Structural Biology Communications 75 (8 …, 2019 | 10 | 2019 |
| An uncommon [K+ (Mg2+) 2] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch RJ Trachman, AR Ferré-D'Amaré RNA 27 (10), 1257-1264, 2021 | 5 | 2021 |
| The bacterial yjdF riboswitch regulates translation through its tRNA-like fold RJ Trachman III, LFM Passalacqua, AR Ferré-D’Amaré Journal of Biological Chemistry, 101934, 2022 | 2 | 2022 |
| Characterizing Fluorescence Properties of Turn-on RNA Aptamers RJ Trachman III, KA Link, JR Knutson, AR Ferré-D’Amaré RNA Structure and Dynamics, 25-36, 2022 | | 2022 |
| Fluorogen-binding RNA aptamers M Ryckelynck, A Autour, P Unrau, E Dolgosheina, SCY Jeng, ... US Patent 11,434,490, 2022 | | 2022 |
| Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser C Jones, B Tran, C Conrad, J Stagno, R Trachman, P Fischer, A Meents, ... Acta Crystallographica Section F: Structural Biology Communications 75 (7 …, 2019 | | 2019 |
| Fluorogen-binding rna aptamers M RYCKELYNK, A AUTOUR, P UNRAU, E DOLGOSHEINA, SCY JENG, ... | | 2018 |
| A THERMODYNAMIC DESCRIPTION OF CATION-RNA INTERACTIONS WITH DIFFERING ION ATMOSPHERE COMPOSITION RJ Trachman Johns Hopkins University, 2014 | | 2014 |
| RNA Folding Landscapes in the Presence of Putrescine and Magnesium RJ Trachman, DE Draper Biophysical Journal 104 (2), 411a, 2013 | | 2013 |
| BIOL 76-Molecular dynamics simulations on the integration host factor-DNA complex MF Bruist, R Zauhar, RJ Trachman, AM Hussey ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236, 2008 | | 2008 |
Adrian R. Ferre-D'AmareSenior Investigator, National Heart, Lung and Blood InstituteVerified email at nih.gov
