Sara C. Madeira
Sara C. Madeira
Associate Professor,LASIGE,Departamento de Informática,Faculdade de Ciências,Universidade de Lisboa
Verified email at - Homepage
Cited by
Cited by
Biclustering algorithms for biological data analysis: a survey
SC Madeira, AL Oliveira
IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 24-45, 2004
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ...
Nucleic acids research 38 (suppl_2), W210-W213, 2010
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2010
Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm
SC Madeira, MC Teixeira, I Sa-Correia, AL Oliveira
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (1), 153-165, 2008
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
JP Gonçalves, SC Madeira, AL Oliveira
BMC research notes 2, 1-11, 2009
BicPAM: Pattern-based biclustering for biomedical data analysis
R Henriques, SC Madeira
Algorithms for Molecular Biology 9, 1-30, 2014
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Goncalves, JK Vogt, SC Madeira, Y Moreau
Nucleic acids research 39 (suppl_2), W334-W338, 2011
A structured view on pattern mining-based biclustering
R Henriques, C Antunes, SC Madeira
Pattern Recognition 48 (12), 3941-3958, 2015
Triclustering algorithms for three-dimensional data analysis: A comprehensive survey
R Henriques, SC Madeira
ACM Computing Surveys (CSUR) 51 (5), 95, 2018
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
SC Madeira, AL Oliveira
Algorithms for Molecular Biology 4, 1-39, 2009
A linear time biclustering algorithm for time series gene expression data
SC Madeira, AL Oliveira
Algorithms in Bioinformatics, 39-52, 2005
BicPAMS: Software for biological data analysis with pattern-based biclustering
R Henriques, FL Ferreira, SC Madeira
BMC Bioinformatics 18 (1), 82, 2017
Predicting progression of mild cognitive impairment to dementia using neuropsychological data: A supervised learning approach using time windows
T Pereira, L Lemos, S Cardoso, D Silva, A Rodrigues, I Santana, ...
BMC Medical Informatics and Decision Making 17 (1), 110, 2017
BicSPAM: Flexible biclustering using sequential patterns
R Henriques, SC Madeira
BMC bioinformatics 15 (1), 130, 2014
BSig: Evaluating the statistical significance of biclustering solutions
R Henriques, SC Madeira
Data Mining and Knowledge Discovery 32 (1), 124-161, 2017
Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictability
T Pereira, FL Ferreira, S Cardoso, D Silva, A de Mendonça, M Guerreiro, ...
BMC Medical Informatics and Decision Making 18 (1), 1-20, 2018
BicNET: flexible module discovery in large-scale biological networks using biclustering
R Henriques, SC Madeira
Algorithms for Molecular Biology 11, 1-30, 2016
Prognostic models based on patient snapshots and time windows: predicting disease progression to assisted ventilation in amyotrophic lateral sclerosis
AV Carreiro, PMT Amaral, S Pinto, P Tomás, M de Carvalho, SC Madeira
Journal of biomedical informatics 58, 133-144, 2015
Spreading in ALS: The relative impact of upper and lower motor neuron involvement
M Gromicho, M Figueiral, H Uysal, J Grosskreutz, M Kuzma‐Kozakiewicz, ...
Annals of Clinical and Translational Neurology, 2020
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