| Non-stationary gaussian process regression with hamiltonian monte carlo M Heinonen, H Mannerström, J Rousu, S Kaski, H Lähdesmäki Artificial Intelligence and Statistics, 732-740, 2016 | 145 | 2016 |
| Learning unknown ODE models with Gaussian processes M Heinonen, C Yildiz, H Mannerström, J Intosalmi, H Lähdesmäki International conference on machine learning, 1959-1968, 2018 | 97 | 2018 |
| In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps M Kandhavelu, H Mannerström, A Gupta, A Häkkinen, J Lloyd-Price, ... BMC Systems Biology 5, 1-9, 2011 | 47 | 2011 |
| Identification of global regulators of T-helper cell lineage specification K Kanduri, S Tripathi, A Larjo, H Mannerström, U Ullah, R Lund, ... Genome medicine 7, 1-11, 2015 | 43 | 2015 |
| Learning stochastic differential equations with gaussian processes without gradient matching C Yildiz, M Heinonen, J Intosalmi, H Mannerstrom, H Lahdesmaki 2018 IEEE 28th International Workshop on Machine Learning for Signal …, 2018 | 41 | 2018 |
| Effects of the promoter open complex formation on gene expression dynamics AS Ribeiro, A Häkkinen, H Mannerström, J Lloyd-Price, O Yli-Harja Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 81 (1 …, 2010 | 27 | 2010 |
| Bayesian metabolic flux analysis reveals intracellular flux couplings M Heinonen, M Osmala, H Mannerström, J Wallenius, S Kaski, J Rousu, ... Bioinformatics 35 (14), i548-i557, 2019 | 25 | 2019 |
| A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways T Äijö, Y Huang, H Mannerström, L Chavez, A Tsagaratou, A Rao, ... Genome Biology 17, 1-22, 2016 | 17 | 2016 |
| lgpr: an interpretable non-parametric method for inferring covariate effects from longitudinal data J Timonen, H Mannerström, A Vehtari, H Lähdesmäki Bioinformatics 37 (13), 1860-1867, 2021 | 16 | 2021 |
| SCHiRM: Single Cell Hierarchical Regression Model to detect dependencies in read count data J Intosalmi, H Mannerström, S Hiltunen, H Lähdesmäki BioRxiv, 335695, 2018 | 9 | 2018 |
| Inference of kinetic parameters of delayed stochastic models of gene expression using a Markov chain approximation H Mannerstrom, O Yli-Harja, AS Ribeiro EURASIP Journal on Bioinformatics and Systems Biology 2011, 1-6, 2011 | 9 | 2011 |
| Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter OP Smolander, M Kandhavelu, H Mannerström, E Lihavainen, ... BMC molecular biology 12, 1-12, 2011 | 7 | 2011 |
| PairGP: Gaussian process modeling of longitudinal data from paired multi-condition studies M Vantini, H Mannerström, S Rautio, H Ahlfors, B Stockinger, ... Computers in Biology and Medicine 143, 105268, 2022 | 4 | 2022 |
| An interpretable probabilistic machine learning method for heterogeneous longitudinal studies J Timonen, H Mannerström, A Vehtari, H Lähdesmäki arXiv preprint arXiv:1912.03549, 2019 | 4 | 2019 |
| A probabilistic framework for molecular network structure inference by means of mechanistic modeling J Timonen, H Mannerström, H Lähdesmäki, J Intosalmi IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (6 …, 2018 | 4 | 2018 |
| Bayesian Metabolic Flux Analysis reveals intracellular flux couplings M Heinonen, M Osmala, H Mannerström, J Wallenius, S Kaski, J Rousu, ... arXiv preprint arXiv:1804.06673, 2018 | 1 | 2018 |
| Identification of global regulators of T-helper cell lineage specification K Kanduri, S Tripathi, A Larjo, H Mannerström, U Ullah, R Lund, ... SCANDINAVIAN JOURNAL OF IMMUNOLOGY 83 (5), 379-379, 2016 | | 2016 |
| A probabilistic model for accurate quantification of DNA methylation modifications. T Äijö, Y Huang, H Mannerström, L Chavez, A Tsagaratou, A Rao, ... | | 2016 |
| Dynamics of Gene Expression under Tetracycline Inducible Promoters OP Smolander, M Kandhavelu, H Mannerström, E Lihavainen, ... Eight International Workshop on Computational Systems Biology, WCSB 2011 …, 2011 | | 2011 |
| Supplementary File 2: In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for M Kandhavelu, H Mannerström, A Gupta, A Häkkinen, J Lloyd-Price, ... | | |
