Michał Boniecki
Michał Boniecki
International Institute of Molecular and Cell Biology in Warsaw
Verified email at genesilico.pl - Homepage
Cited by
Cited by
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction
JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ...
Rna 18 (4), 610-625, 2012
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
MJ Boniecki, G Lach, WK Dawson, K Tomala, P Lukasz, T Soltysinski, ...
Nucleic acids research 44 (7), e63-e63, 2016
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints
M Magnus, MJ Boniecki, W Dawson, JM Bujnicki
Nucleic acids research 44 (W1), W315-W319, 2016
Protein fragment reconstruction using various modeling techniques
M Boniecki, P Rotkiewicz, J Skolnick, A Kolinski
Journal of computer-aided molecular design 17 (11), 725-738, 2003
FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6
J Kosinski, MJ Gajda, IA Cymerman, MA Kurowski, M Pawlowski, ...
PROTEINS: Structure, Function, and Bioinformatics 61 (S7), 106-113, 2005
TOUCHSTONE: a unified approach to protein structure prediction
J Skolnick, Y Zhang, AK Arakaki, A Kolinski, M Boniecki, A Szilágyi, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 469-479, 2003
Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement
J Skolnick, A Kolinski, D Kihara, M Betancourt, P Rotkiewicz, M Boniecki
Proteins: Structure, Function, and Bioinformatics 45 (S5), 149-156, 2001
RNA and protein 3D structure modeling: similarities and differences
K Rother, M Rother, M Boniecki, T Puton, JM Bujnicki
Journal of molecular modeling 17 (9), 2325-2336, 2011
Theoretical model of prion propagation: a misfolded protein induces misfolding
E Małolepsza, M Boniecki, A Kolinski, L Piela
Proceedings of the National Academy of Sciences 102 (22), 7835-7840, 2005
Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA
KH Kaminska, U Baraniak, M Boniecki, K Nowaczyk, A Czerwoniec, ...
Proteins: Structure, Function, and Bioinformatics 70 (1), 1-18, 2008
Computational modeling of RNA 3D structures, with the aid of experimental restraints
M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ...
RNA biology 11 (5), 522-536, 2014
I-Ssp6803I: the first homing endonuclease from the PD-(D/E) XK superfamily exhibits an unusual mode of DNA recognition
J Orlowski, M Boniecki, JM Bujnicki
Bioinformatics 23 (5), 527-530, 2007
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Z Miao, RW Adamiak, M Antczak, MJ Boniecki, J Bujnicki, SJ Chen, ...
RNA 26 (8), 982-995, 2020
MetalionRNA: computational predictor of metal-binding sites in RNA structures
A Philips, K Milanowska, G Lach, M Boniecki, K Rother, JM Bujnicki
Bioinformatics 28 (2), 198-205, 2012
Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR
E Dzananovic, TR Patel, G Chojnowski, MJ Boniecki, S Deo, K McEleney, ...
Journal of structural biology 185 (1), 48-57, 2014
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information
P Boccaletto, M Magnus, C Almeida, A Żyła, A Astha, R Pluta, B Bagiński, ...
Nucleic acids research 46 (D1), D202-D205, 2018
Type II restriction endonuclease R. Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site
KH Kaminska, M Kawai, M Boniecki, I Kobayashi, JM Bujnicki
BMC structural biology 8 (1), 1-14, 2008
S6: S18 ribosomal protein complex interacts with a structural motif present in its own mRNA
D Matelska, E Purta, S Panek, MJ Boniecki, JM Bujnicki, ...
RNA 19 (10), 1341-1348, 2013
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