Micha³ Boniecki
Micha³ Boniecki
International Institute of Molecular and Cell Biology in Warsaw
Verified email at genesilico.pl - Homepage
Title
Cited by
Cited by
Year
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction
JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ...
Rna 18 (4), 610-625, 2012
1952012
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
MJ Boniecki, G Lach, WK Dawson, K Tomala, P Lukasz, T Soltysinski, ...
Nucleic acids research 44 (7), e63-e63, 2016
1352016
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ...
Rna 21 (6), 1066-1084, 2015
1142015
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ...
Rna 23 (5), 655-672, 2017
922017
Protein fragment reconstruction using various modeling techniques
M Boniecki, P Rotkiewicz, J Skolnick, A Kolinski
Journal of computer-aided molecular design 17 (11), 725-738, 2003
902003
TOUCHSTONE: a unified approach to protein structure prediction
J Skolnick, Y Zhang, AK Arakaki, A Kolinski, M Boniecki, A Szilágyi, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 469-479, 2003
842003
FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6
J Kosinski, MJ Gajda, IA Cymerman, MA Kurowski, M Pawlowski, ...
PROTEINS: Structure, Function, and Bioinformatics 61 (S7), 106-113, 2005
792005
RNA 3D structure analysis and prediction
N Leontis, E Westhof
Springer Science & Business Media, 2012
782012
Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement
J Skolnick, A Kolinski, D Kihara, M Betancourt, P Rotkiewicz, M Boniecki
Proteins: Structure, Function, and Bioinformatics 45 (S5), 149-156, 2001
772001
RNA and protein 3D structure modeling: similarities and differences
K Rother, M Rother, M Boniecki, T Puton, JM Bujnicki
Journal of molecular modeling 17 (9), 2325-2336, 2011
732011
SimRNAweb: a web server for RNA 3D structure modeling with optional restraints
M Magnus, MJ Boniecki, W Dawson, JM Bujnicki
Nucleic acids research 44 (W1), W315-W319, 2016
642016
Theoretical model of prion propagation: a misfolded protein induces misfolding
E Ma³olepsza, M Boniecki, A Kolinski, L Piela
Proceedings of the National Academy of Sciences 102 (22), 7835-7840, 2005
602005
Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA
KH Kaminska, U Baraniak, M Boniecki, K Nowaczyk, A Czerwoniec, ...
Proteins: Structure, Function, and Bioinformatics 70 (1), 1-18, 2008
442008
Computational modeling of RNA 3D structures, with the aid of experimental restraints
M Magnus, D Matelska, G £ach, G Chojnowski, MJ Boniecki, E Purta, ...
RNA biology 11 (5), 522-536, 2014
392014
I-Ssp6803I: the first homing endonuclease from the PD-(D/E) XK superfamily exhibits an unusual mode of DNA recognition
J Orlowski, M Boniecki, JM Bujnicki
Bioinformatics 23 (5), 527-530, 2007
322007
MetalionRNA: computational predictor of metal-binding sites in RNA structures
A Philips, K Milanowska, G Lach, M Boniecki, K Rother, JM Bujnicki
Bioinformatics 28 (2), 198-205, 2012
272012
Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR
E Dzananovic, TR Patel, G Chojnowski, MJ Boniecki, S Deo, K McEleney, ...
Journal of structural biology 185 (1), 48-57, 2014
222014
Type II restriction endonuclease R. Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site
KH Kaminska, M Kawai, M Boniecki, I Kobayashi, JM Bujnicki
BMC structural biology 8 (1), 48, 2008
182008
S6: S18 ribosomal protein complex interacts with a structural motif present in its own mRNA
D Matelska, E Purta, S Panek, MJ Boniecki, JM Bujnicki, ...
RNA 19 (10), 1341-1348, 2013
162013
Template-based and template-free modeling of RNA 3D structure: Inspirations from protein structure modeling
K Rother, M Rother, M Boniecki, T Puton, K Tomala, P £ukasz, JM Bujnicki
RNA 3D structure analysis and prediction, 67-90, 2012
152012
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