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Marek Kokot
Tytuł
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KMC 3: counting and manipulating k-mer statistics
M Kokot, M Długosz, S Deorowicz
Bioinformatics 33 (17), 2759-2761, 2017
4792017
KMC 2: fast and resource-frugal k-mer counting
S Deorowicz, M Kokot, S Grabowski, A Debudaj-Grabysz
Bioinformatics 31 (10), 1569-1576, 2015
3002015
Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
J Khan, M Kokot, S Deorowicz, R Patro
Genome biology 23 (1), 190, 2022
262022
Kmer-db: instant evolutionary distance estimation
S Deorowicz, A Gudyś, M Długosz, M Kokot, A Danek
Bioinformatics 35 (1), 133-136, 2019
242019
Even faster sorting of (not only) integers
M Kokot, S Deorowicz, M Długosz
Man-Machine Interactions 5: 5th International Conference on Man-Machine …, 2018
182018
Sorting data on ultra-large scale with RADULS: New incarnation of radix sort
M Kokot, S Deorowicz, A Debudaj-Grabysz
Beyond Databases, Architectures and Structures. Towards Efficient Solutions …, 2017
172017
CoLoRd: Compressing long reads
M Kokot, A Gudyś, H Li, S Deorowicz
Nature Methods 19 (4), 441-444, 2022
132022
The K-mer File Format: a standardized and compact disk representation of sets of k-mers
Y Dufresne, T Lemane, P Marijon, P Peterlongo, A Rahman, M Kokot, ...
Bioinformatics 38 (18), 4423-4425, 2022
122022
NOMAD2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads
M Kokot, R Dehghannasiri, TZ Baharav, J Salzman, S Deorowicz
bioRxiv, 2023.03. 17.533189, 2023
72023
VCFShark: how to squeeze a VCF file
S Deorowicz, A Danek, M Kokot
Bioinformatics 37 (19), 3358-3360, 2021
52021
Improvements in DNA Reads Correction
M Długosz, S Deorowicz, M Kokot
Man-Machine Interactions 5: 5th International Conference on Man-Machine …, 2018
32018
Ultra-efficient, unified discovery from microbial sequencing with SPLASH and precise statistical assembly
G Henderson, A Gudys, T Baharav, P Sundaramurthy, M Kokot, PL Wang, ...
bioRxiv, 2024.01. 18.576133, 2024
12024
Even better correction of genome sequencing data
M Dlugosz, S Deorowicz, M Kokot
arXiv preprint arXiv:1703.00690, 2017
2017
K-MER COUNTING PROBLEM
M KOKOT, S DEOROWICZ
Wyznaczanie zbiorów podsłów sekwencji nukleotydowych w danych z sekwencjonowania genomów
M Kokot
Nie można teraz wykonać tej operacji. Spróbuj ponownie później.
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