Tatyana Goldberg
Tatyana Goldberg
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Cited by
Cited by
A draft network of ligand–receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 6 (1), 7866, 2015
PredictProtein—an open resource for online prediction of protein structural and functional features
G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ...
Nucleic acids research 42 (W1), W337-W343, 2014
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
LocTree3 prediction of localization
T Goldberg, M Hecht, T Hamp, T Karl, G Yachdav, N Ahmed, U Altermann, ...
Nucleic acids research 42 (W1), W350-W355, 2014
MSAViewer: interactive JavaScript visualization of multiple sequence alignments
G Yachdav, S Wilzbach, B Rauscher, R Sheridan, I Sillitoe, J Procter, ...
Bioinformatics 32 (22), 3501-3503, 2016
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kala¹, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
PredictProtein-predicting protein structure and function for 29 years
M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ...
Nucleic acids research 49 (W1), W535-W540, 2021
LocTree2 predicts localization for all domains of life
T Goldberg, T Hamp, B Rost
Bioinformatics 28 (18), i458-i465, 2012
Radiomics in radiooncology–challenging the medical physicist
JC Peeken, M Bernhofer, B Wiestler, T Goldberg, D Cremers, B Rost, ...
Physica medica 48, 27-36, 2018
NLSdb—major update for database of nuclear localization signals and nuclear export signals
M Bernhofer, T Goldberg, S Wolf, M Ahmed, J Zaugg, M Boden, B Rost
Nucleic acids research 46 (D1), D503-D508, 2018
LocFuse: human protein–protein interaction prediction via classifier fusion using protein localization information
J Zahiri, M Mohammad-Noori, R Ebrahimpour, S Saadat, JH Bozorgmehr, ...
Genomics 104 (6), 496-503, 2014
Combining multimodal imaging and treatment features improves machine learning‐based prognostic assessment in patients with glioblastoma multiforme
JC Peeken, T Goldberg, T Pyka, M Bernhofer, B Wiestler, KA Kessel, ...
Cancer medicine 8 (1), 128-136, 2019
A combined omics approach to generate the surface atlas of human naive CD4+ T cells during early T-cell receptor activation
A Graessel, SM Hauck, C von Toerne, E Kloppmann, T Goldberg, ...
Molecular & Cellular Proteomics 14 (8), 2085-2102, 2015
Computational prediction shines light on type III secretion origins
T Goldberg, B Rost, Y Bromberg
Scientific reports 6 (1), 34516, 2016
Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
K Neuhaus, R Landstorfer, L Fellner, S Simon, A Schafferhans, ...
BMC genomics 17, 1-16, 2016
LocText: relation extraction of protein localizations to assist database curation
JM Cejuela, S Vinchurkar, T Goldberg, MS Prabhu Shankar, ...
BMC bioinformatics 19, 1-11, 2018
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome
SM Hücker, Z Ardern, T Goldberg, A Schafferhans, M Bernhofer, ...
PloS one 12 (9), e0184119, 2017
Anatomy of BioJS, an open source community for the life sciences
G Yachdav, T Goldberg, S Wilzbach, D Dao, I Shih, S Choudhary, ...
Elife 4, e07009, 2015
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case
D Amar, I Frades, A Danek, T Goldberg, SK Sharma, PE Hedley, ...
BMC plant biology 14, 1-14, 2014
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Articles 1–20