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T. M. Murali
Tytuł
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Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
A Pratapa, AP Jalihal, JN Law, A Bharadwaj, TM Murali
Nature methods 17 (2), 147-154, 2020
6462020
Extracting conserved gene expression motifs from gene expression data
TM Murali, S Kasif
Biocomputing 2003, 77-88, 2002
5622002
A Monte Carlo algorithm for fast projective clustering
CM Procopiuc, M Jones, PK Agarwal, TM Murali
Proceedings of the 2002 ACM SIGMOD international conference on Management of …, 2002
5202002
Whole-genome annotation by using evidence integration in functional-linkage networks
U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004
4202004
The landscape of human proteins interacting with viruses and other pathogens
MD Dyer, TM Murali, BW Sobral
PLoS pathogens 4 (2), e32, 2008
3872008
RankGene: identification of diagnostic genes based on expression data
Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif
Bioinformatics 19 (12), 1578-1579, 2003
2542003
Computational prediction of host-pathogen protein–protein interactions
MD Dyer, TM Murali, BW Sobral
Bioinformatics 23 (13), i159-i166, 2007
2162007
The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
MD Dyer, C Neff, M Dufford, CG Rivera, D Shattuck, J Bassaganya-Riera, ...
PloS one 5 (8), e12089, 2010
1622010
Consistent solid and boundary representations from arbitrary polygonal data
TM Murali, TA Funkhouser
Proceedings of the 1997 symposium on Interactive 3D graphics, 155-ff., 1997
1591997
Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin
JZ Ruscio, D Kumar, M Shukla, MG Prisant, TM Murali, AV Onufriev
Proceedings of the National Academy of Sciences 105 (27), 9204-9209, 2008
1572008
New similarity measures between polylines with applications to morphing and polygon sweeping
A Efrat, LJ Guibas, JSB Har-Peled, Sariel, Mitchell, TM Murali
Discrete & Computational Geometry 28 (4), 535-569, 2002
1372002
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
JT Reese, H Blau, E Casiraghi, T Bergquist, JJ Loomba, TJ Callahan, ...
EBioMedicine 87, 2023
1292023
Supervised learning and prediction of physical interactions between human and HIV proteins
MD Dyer, TM Murali, BW Sobral
Infection, Genetics and Evolution 11 (5), 917-923, 2011
1102011
Sweeping simple polygons with a chain of guards
A Efrat, LJ Guibas, S Har-Peled, DC Lin, JSB Mitchell, TM Murali
Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms …, 2000
1102000
The art of gene function prediction
TM Murali, CJ Wu, S Kasif
Nature biotechnology 24 (12), 1474-1475, 2006
992006
Planning robot motion strategies for efficient model construction
H González-Baños, E Mao, JC Latombe, TM Murali, A Efrat
Robotics Research: The Ninth International Symposium, 345-352, 2000
962000
Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field
P Li, A Sioson, SP Mane, A Ulanov, G Grothaus, LS Heath, TM Murali, ...
Plant molecular biology 62, 593-609, 2006
902006
I/O-efficient algorithms for contour line extraction and planar graph blocking
PK Agarwal, L Arge, TM Murali, V Kasturi R, JS Vitter
Society for Industrial and Applied Mathematics, 1998
841998
From START to FINISH: computational analysis of cell cycle control in budding yeast
P Kraikivski, KC Chen, T Laomettachit, TM Murali, JJ Tyson
NPJ systems biology and applications 1 (1), 1-9, 2015
772015
Cylindrical static and kinetic binary space partitions
PK Agarwal, LJ Guibas, TM Murali, JS Vitter
Proceedings of the thirteenth annual symposium on Computational geometry, 39-48, 1997
761997
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