Aleksander Jankowski

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Eileen E FurlongGroup Leader, Head of Dept.: European Molecular Biology LaboratoryVerified email at embl.de
shyam prabhakarGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Witold RudnickiUniversity of BiałystokVerified email at uwb.edu.pl
Ralf JauchThe University of Hong KongVerified email at hku.hk
Jerzy TiurynProfesor informatyki, Uniwersytet WarszawskiVerified email at mimuw.edu.pl
Yad Ghavi-HelmPost-doc, EMBLVerified email at embl.de
Miron KursaInterdisciplinary Centre for Mathematical and Computational Modelling , University of WarsawVerified email at uw.edu.pl
Jan KorbelHead of Data Science, EMBL & Bridging Research Division Head, DKFZ, HeidelbergVerified email at embl.de
Maria Cristina GambettaAssociate Professor, University of LausanneVerified email at unil.ch
Christoph SchaubEMBLVerified email at fau.de
Ewa SzczurekAssociate Professor at University of Warsaw / Institute AI for Health, Helmholtz Zentrum MünchenVerified email at mimuw.edu.pl
Yong-Heng HUANGFree University of BerlinVerified email at zedat.fu-berlin.de
Julien DorierUniversity of LausanneVerified email at unil.ch
Marion LeleuScientific collaborator - Bioinformatician - EPFL - Lausanne - SwitzerlandVerified email at epfl.ch
Christian IseliHead of BioInformatics Competence Center, EPFL, SwitzerlandVerified email at epfl.ch
Xiao LiPrinceton UniversityVerified email at princeton.edu
Rebecca SmithPhD candidate at EPFL - Ecole Polytechnique Fédérale de LausanneVerified email at epfl.ch
Simon Restrepoarcoris bio AGVerified email at arcorisbio.com
Nicolas GUEXUNIL - University of Lausanne, SwitzerlandVerified email at unil.ch
Jenisha KhadkaUniversity of LausanneVerified email at unil.ch

Aleksander Jankowski

Assistant Professor, University of Warsaw

Verified email at uw.edu.pl - Homepage

Computational Biology Bioinformatics Regulatory Genomics Machine Learning


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Boruta – A System for Feature Selection MB Kursa, A Jankowski, WR Rudnicki Fundamenta Informaticae 101 (4), 271-285, 2010	780	2010
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression Y Ghavi-Helm, A Jankowski, S Meiers, RR Viales, JO Korbel, ... Nature genetics 51 (8), 1272-1282, 2019	347	2019
SOXE transcription factors form selective dimers on non-compact DNA motifs through multifaceted interactions between dimerization and high-mobility group domains YH Huang, A Jankowski, KSE Cheah, S Prabhakar, R Jauch Scientific Reports 5, 10398, 2015	88	2015
Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers A Jankowski, E Szczurek, R Jauch, J Tiuryn, S Prabhakar Genome Research 23 (8), 1307-1318, 2013	40	2013
TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers A Jankowski, S Prabhakar, J Tiuryn BMC Genomics 15 (1), 208, 2014	38	2014
Chromosome-level organization of the regulatory genome in the Drosophila nervous system G Mohana, J Dorier, X Li, M Mouginot, RC Smith, H Malek, M Leleu, ... Cell 186 (18), 3826-3844. e26, 2023	30	2023
The new SIMD implementation of the Smith-Waterman algorithm on Cell microprocessor WR Rudnicki, A Jankowski, A Modzelewski, A Piotrowski, A Zadrożny Fundamenta Informaticae 96 (1-2), 181-194, 2009	21	2009
DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1 X Wang, Y Srivastava, A Jankowski, V Malik, Y Wei, RCH del Rosario, ... Nucleic Acids Research 46 (11), 5470-5486, 2018	18	2018
Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data A Jankowski, J Tiuryn, S Prabhakar Bioinformatics 32 (16), 2419-2426, 2016	17	2016
Chromatin gene-gene loops support the cross-regulation of genes with related function T Pollex, R Marco-Ferreres, L Ciglar, Y Ghavi-Helm, A Rabinowitz, ... Molecular Cell 84 (5), 822-838. e8, 2024	13	2024
Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation T Pollex, A Rabinowitz, MC Gambetta, R Marco-Ferreres, RR Viales, ... Nature Genetics, 1-11, 2024	12	2024
New enhancer-promoter interactions are gained during tissue differentiation and reflect changes in E/P activity T Pollex, A Rabinowitz, MC Gambetta, R Marco-Ferreres, RR Viales, ... bioRxiv, 2022.12. 07.519443, 2022	4	2022
The pZRS non-coding regulatory mutation resulting in triphalangeal thumb–polysyndactyly syndrome changes the pattern of local interactions JWP Potuijt, A Sowinska-Seidler, E Bukowska-Olech, P Nguyen, ... Molecular Genetics and Genomics 297 (5), 1343-1352, 2022	4	2022
Enhanceosome transcription factors preferentially dimerize with high mobility group proteins A Jankowski, P Obara, U Mathur, J Tiuryn BMC Systems Biology 10 (1), 14, 2016	4	2016
Systematic screening of enhancer-blocking insulators in Drosophila identifies their DNA sequence determinants A Tonelli, P Cousin, A Jankowski, B Wang, J Dorier, J Barraud, ... Developmental Cell, 2024	1	2024
Tracking changes in functionality and morphology of repopulated microglia in young and old mice ZM Luczak-Sobotkowska, P Rosa, MB Lopez, N Ochocka, A Kiryk, ... Journal of neuroinflammation 21 (1), 248, 2024		2024
Tracking changes in functionality and morphology of repopulated microglia in young and old mice B Kaminska, Z Luczak-Sobotkowska, P Rosa, M Banqueri-Lopez, ... bioRxiv, 2024.07. 12.603244, 2024		2024

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