Zhenjiang Zech Xu

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Rob KnightDirector, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSDVerified email at ucsd.edu
Antonio GonzálezProgrammer Analyst, UC San DiegoVerified email at ucsd.edu
Yoshiki Vázquez-BaezaUniversity of California, San DiegoVerified email at ucsd.edu
James T. MortonSimons FoundationVerified email at flatironinstitute.org
Jessica L. MetcalfAssociate Professor, Colorado State University, Fort Collins, COVerified email at colostate.edu
Pieter C DorresteinUCSDVerified email at ucsd.edu
Sophie WeissGraduate Student at University of Colorado at BoulderVerified email at colorado.edu
David H. MathewsDepartment of Biochemistry and Biophysics, University of Rochester Medical CenterVerified email at urmc.rochester.edu
Luke R. ThompsonAssociate Research Professor, NOAA Northern Gulf InstituteVerified email at noaa.gov
Sejin SongUniversity of California San DiegoVerified email at ucsd.edu
Justine DebeliusKarolinska InstituetVerified email at ki.se
J Gregory CaporasoNorthern Arizona UniversityVerified email at nau.edu
Will Van TreurenPhD Microbiology and Immunology, Stanford UniversityVerified email at stanford.edu
Jack A GilbertUniversity of California, San DiegoVerified email at ucsd.edu
William A WaltersPost-doc, Cornell UniversityVerified email at colorado.edu
Zhi John LuPI, Tsinghua UniversityVerified email at biomed.tsinghua.edu.cn

Zhenjiang Zech Xu

State Key Laboratory of Food Science and Technology, Nanchang University

Verified email at ucsd.edu

(meta)genomics microbiome Food & nutrition ncRNA data mining


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	3154	2019
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	1138	2017
Normalization and microbial differential abundance strategies depend upon data characteristics S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ... Microbiome 5 (1), 1-18, 2017	897	2017
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018	683	2018
Meta-analyses of human gut microbes associated with obesity and IBD WA Walters, Z Xu, R Knight FEBS letters 588 (22), 4223-4233, 2014	647	2014
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), e00191-16, 2017	627	2017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	607	2018
Advancing Our Understanding of the Human Microbiome Using QIIME. JA Navas-Molina, JM Peralta-Sanchezl, A Gonzalezl, PJ McMurdieI, ... Methods in Enzymology, 371, 2013	489	2013
Microbiome-wide association studies link dynamic microbial consortia to disease JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ... Nature 535 (7610), 94-103, 2016	487	2016
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ... The ISME journal 10 (7), 1669-1681, 2016	421	2016
Subsistence strategies in traditional societies distinguish gut microbiomes AJ Obregon-Tito, RY Tito, J Metcalf, K Sankaranarayanan, JC Clemente, ... Nature communications 6 (1), 1-9, 2015	325	2015
Dietary effects on human gut microbiome diversity Z Xu, R Knight British Journal of Nutrition 113 (S1), S1-S5, 2015	318	2015
Microbial community assembly and metabolic function during mammalian corpse decomposition JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ... Science 351 (6269), 158-162, 2016	305	2016
American Gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), e00031-18, 2018	281	2018
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight MSystems 1 (3), e00021-16, 2016	226	2016
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ... Nature communications 9 (1), 1-13, 2018	153	2018
Prediction of early childhood caries via spatial-temporal variations of oral microbiota F Teng, F Yang, S Huang, C Bo, ZZ Xu, A Amir, R Knight, J Ling, J Xu Cell host & microbe 18 (3), 296-306, 2015	152	2015
Phylogenetic placement of exact amplicon sequences improves associations with clinical information S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ... Msystems 3 (3), e00021-18, 2018	129	2018
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease C Caussy, A Tripathi, G Humphrey, S Bassirian, S Singh, C Faulkner, ... Nature communications 10 (1), 1-9, 2019	111	2019
Open-source sequence clustering methods improve the state of the art E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ... MSystems 1 (1), e00003-15, 2016	103	2016

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