Zhenjiang Zech Xu
Zhenjiang Zech Xu
State Key Laboratory of Food Science and Technology, Nanchang University
Verified email at ucsd.edu
Cited by
Cited by
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
Meta‐analyses of human gut microbes associated with obesity and IBD
WA Walters, Z Xu, R Knight
FEBS letters 588 (22), 4223-4233, 2014
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5 (1), 27, 2017
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
Advancing Our Understanding of the Human Microbiome Using QIIME.
JA Navas-Molina, JM Peralta-Sanchezl, A Gonzalezl, PJ McMurdieI, ...
Methods in Enzymology, 371, 2013
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
MSystems 2 (2), 2017
Subsistence strategies in traditional societies distinguish gut microbiomes
AJ Obregon-Tito, RY Tito, J Metcalf, K Sankaranarayanan, JC Clemente, ...
Nature communications 6, 6505, 2015
Dietary effects on human gut microbiome diversity
Z Xu, R Knight
British Journal of Nutrition 113 (S1), S1-S5, 2015
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight
MSystems 1 (3), 2016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
MSystems 3 (3), e00031-18, 2018
Prediction of early childhood caries via spatial-temporal variations of oral microbiota
F Teng, F Yang, S Huang, C Bo, ZZ Xu, A Amir, R Knight, J Ling, J Xu
Cell host & microbe 18 (3), 296-306, 2015
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor
MP Vockenhuber, CM Sharma, MG Statt, D Schmidt, Z Xu, S Dietrich, ...
RNA biology 8 (3), 468-477, 2011
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), e00003-15, 2016
Which is more important for classifying microbial communities: who’s there or what they can do?
Z Xu, D Malmer, MGI Langille, SF Way, R Knight
The ISME journal 8 (12), 2357-2359, 2014
Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data
SJ Weiss, Z Xu, A Amir, S Peddada, K Bittinger, A Gonzalez, C Lozupone, ...
PeerJ PrePrints, 2015
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