Sophie Abby
Sophie Abby
CNRS researcher, Université Grenoble Alpes
Verified email at - Homepage
Cited by
Cited by
Identification of protein secretion systems in bacterial genomes
SS Abby, J Cury, J Guglielmini, B Néron, M Touchon, EPC Rocha
Scientific reports 6, 23080, 2016
The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems
SS Abby, EPC Rocha
PLoS Genetics 8 (9), e1002983, 2012
MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
SS Abby, B Néron, H Ménager, M Touchon, EPC Rocha
PLOS ONE 9 (10), e110726, 2014
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin
Proceedings of the National Academy of Sciences 109 (43), 17513-17518, 2012
Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion
J Guglielmini, B Néron, SS Abby, MP Garcillán-Barcia, F de la Cruz, ...
Nucleic acids research 42 (9), 5715-5727, 2014
Lateral gene transfer as a support for the tree of life
SS Abby, E Tannier, M Gouy, V Daubin
Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
M Kerou, P Offre, L Valledor, SS Abby, M Melcher, M Nagler, ...
Proceedings of the National Academy of Sciences 113 (49), E7937-E7946, 2016
Comparative genomics and the evolution of prokaryotes
S Abby, V Daubin
Trends in microbiology 15 (3), 135-141, 2007
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
SS Abby, E Tannier, M Gouy, V Daubin
BMC bioinformatics 11 (1), 324, 2010
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
R Denise, SS Abby, EPC Rocha
PLOS Biology 17 (7), e3000390, 2019
Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome
SS Abby, M Melcher, M Kerou, M Krupovic, M Stieglmeier, C Rossel, ...
Frontiers in Microbiology, 28, 2018
Immune Subversion and Quorum-Sensing Shape the Variation in Infectious Dose among Bacterial Pathogens
JA Gama, SS Abby, S Vieira-Silva, F Dionisio, EPC Rocha
PLoS Pathogens 8 (2), e1002503, 2012
Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder
SS Abby, EPC Rocha
Bacterial Protein Secretion Systems: Methods and Protocols, 1-21, 2017
Bacteria in Ostreococcus tauri cultures–friends, foes or hitchhikers?
SS Abby, M Touchon, A De Jode, N Grimsley, G Piganeau
Frontiers in microbiology 5, 505, 2014
Ammonia oxidation by the arctic terrestrial thaumarchaeote Ca. Nitrosocosmicus arcticus is stimulated by increasing temperatures
RJE Alves, M Kerou, A Zappe, R Bittner, SS Abby, H Schmidt, K Pfeifer, ...
Frontiers in Microbiology 10, 1571, 2019
The Evolution of Protein Secretion Systems by Co-option and Tinkering of Cellular Machineries
R Denise, SS Abby, EPC Rocha
Trends in Microbiology 28 (5), 372-386, 2020
Asynchronous division by non-ring FtsZ in the gammaproteobacterial symbiont of Robbea hypermnestra.
N Leisch, N Pende, PM Weber, HR Gruber-Vodicka, J Verheul, ...
Nature Microbiology 2, 16182, 2016
A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin
NN Nickerson, SS Abby, EPC Rocha, M Chami, AP Pugsley
Journal of Bacteriology 194 (18), 4951-4958, 2012
Geochemical transition zone powering microbial growth in subsurface sediments.
R Zhao, JM Mogollón, SS Abby, C Schleper, JF Biddle, DL Roerdink, ...
Proceedings of the National Academy of Sciences of the United States of America, 2020
Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway
L Pelosi, SS Abby, L Loiseau, B Rascalou, MH Chehade, B Faivre, ...
mBio 10 (4), e01319-19, 2019
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