Alexander Schönhuth

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Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Alexander SchliepAssociate Professor, Gothenburg UniversityVerified email at schlieplab.org
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Ivan G. CostaProfessor, Institute of Computational Genomics, RWTH AachenVerified email at rwth-aachen.de
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Paul I W de BakkerVertex PharmaceuticalsVerified email at vrtx.com
Laurent FrancioliVertex PharmaceuticalsVerified email at vrtx.com
Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Cisca Wijmenga, PhDERC advanced investigator; Professor of Human Genetics, Dept Genetics (MGE), UMCG, Groningen, theVerified email at umcg.nl
Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
Raheleh SalariNatera IncVerified email at natera.com
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Martin EsterDistinguished Professor of Computer Science, Simon Fraser UniversityVerified email at cs.sfu.ca
Fereydoun HormozdiariAssociate Professor at University of California - DavisVerified email at ucdavis.edu
Aaron R Colak, PhDHead of Core Machine LearningVerified email at qualtrics.com
Alice Carolyn McHardyHelmholtz Centre for Infection ResearchVerified email at helmholtz-hzi.de
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
Victor GuryevEuropean Research Institute for the Biology of Ageing, University of GroningenVerified email at umcg.nl
Iman HajirasoulihaAssociate Professor, Weill Cornell Medicine of Cornell University, New York CityVerified email at med.cornell.edu

Alexander Schönhuth

Full Professor, Faculty for Technology, Bielefeld University

Verified email at cebitec.uni-bielefeld.de - Homepage

Deep Learning in Genomics Computational Genomics Data Science Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	676	2020
Whole-genome sequence variation, population structure and demographic history of the Dutch population Nature genetics 46 (8), 818-825, 2014	669	2014
Genome-wide patterns and properties of de novo mutations in humans LC Francioli, PP Polak, A Koren, A Menelaou, S Chun, I Renkens, ... Nature genetics 47 (7), 822-826, 2015	375	2015
Using hidden Markov models to analyze gene expression time course data A Schliep, A Schönhuth, C Steinhoff Bioinformatics 19 (suppl_1), i255-i263, 2003	334	2003
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	278	2018
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	277	2015
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	193	2016
Characteristics of de novo structural changes in the human genome WP Kloosterman, LC Francioli, F Hormozdiari, T Marschall, JY Hehir-Kwa, ... Genome research 25 (6), 792-801, 2015	143	2015
ProClust: improved clustering of protein sequences with an extended graph-based approach P Pipenbacher, A Schliep, S Schneckener, A Schönhuth, D Schomburg, ... Bioinformatics 18 (suppl_2), S182-S191, 2002	119	2002
Viral quasispecies assembly via maximal clique enumeration. A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel PLoS Computational Biology 10 (3), e1003515, 2014	114	2014
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’ P Deelen, A Menelaou, EM Van Leeuwen, A Kanterakis, F Van Dijk, ... European Journal of Human Genetics 22 (11), 1321-1326, 2014	109	2014
CLEVER: Clique-Enumerating Variant Finder T Marschall, I Costa, S Canzar, M Bauer, G Klau, A Schliep, A Schönhuth Bioinformatics 28 (22), 2875-2882, 2012	103	2012
Analyzing gene expression time-courses A Schliep, IG Costa, C Steinhoff, A Schonhuth IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005	99	2005
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants JY Hehir-Kwa, T Marschall, WP Kloosterman, LC Francioli, JA Baaijens, ... Nature communications 7 (1), 1-10, 2016	95	2016
De novo assembly of viral quasispecies using overlap graphs JA Baaijens, AZ El Aabidine, E Rivals, A Schönhuth Genome research 27 (5), 835-848, 2017	90	2017
Population-specific genotype imputations using minimac or IMPUTE2 EM Van Leeuwen, A Kanterakis, P Deelen, MV Kattenberg, PE Slagboom, ... Nature protocols 10 (9), 1285-1296, 2015	82	2015
Inferring cancer subnetwork markers using density-constrained biclustering P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester Bioinformatics 26 (18), i625-i631, 2010	75	2010
Discovering motifs that induce sequencing errors M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall BMC bioinformatics 14 (5), 1-10, 2013	73	2013
Leveraging distant relatedness to quantify human mutation and gene-conversion rates PF Palamara, LC Francioli, PR Wilton, G Genovese, A Gusev, ... The American Journal of Human Genetics 97 (6), 775-789, 2015	69	2015
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels T Marschall, I Hajirasouliha, A Schönhuth Bioinformatics 29 (24), 3143-3150, 2013	56	2013

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