| Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond P Zhou, T Li The Journal of chemical physics 144 (9), 2016 | 85 | 2016 |
| Dissecting transition cells from single-cell transcriptome data through multiscale stochastic dynamics P Zhou, S Wang, T Li, Q Nie Nature Communications 12, 5609, 2021 | 56 | 2021 |
| Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data Y Sha, S Wang, P Zhou, Q Nie Nucleic acids research 48 (17), 9505-9520, 2020 | 52 | 2020 |
| On the mathematics of RNA velocity I: Theoretical analysis T Li, J Shi, Y Wu, P Zhou CSIAM Transactions on Applied Mathematics 2 (1), 1-55, 2021 | 22 | 2021 |
| Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data Y Sha, S Wang, F Bocci, P Zhou, Q Nie Frontiers in genetics 11, 1700, 2021 | 19 | 2021 |
| spliceJAC: transition genes and state‐specific gene regulation from single‐cell transcriptome data F Bocci, P Zhou, Q Nie Molecular systems biology 18 (11), e11176, 2022 | 18 | 2022 |
| Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis K Nee, D Ma, QH Nguyen, M Pein, N Pervolarakis, J Insua-Rodríguez, ... Nature Genetics 55 (4), 595-606, 2023 | 15 | 2023 |
| Integrating single-cell datasets with ambiguous batch information by incorporating molecular network features J Dong, P Zhou, Y Wu, Y Chen, H Xie, Y Gao, J Lu, J Yang, X Zhang, ... Briefings in Bioinformatics 23 (1), bbab366, 2022 | 15* | 2022 |
| Single-cell RNA-seq analysis reveals the acquisition of cancer stem cell traits and increase of cell–cell signaling during EMT progression F Bocci, P Zhou, Q Nie Cancers 13 (22), 5726, 2021 | 12 | 2021 |
| Stochasticity Triggers Activation of the S-phase Checkpoint Pathway in Budding Yeast P Zhou, X Gao, X Li, L Li, C Niu, Q Ouyang, H Lou, T Li, F Li Physical Review X 11 (1), 011004, 2021 | 10 | 2021 |
| Divergent resistance mechanisms to immunotherapy explain responses in different skin cancers E Dollinger, D Bergman, P Zhou, SX Atwood, Q Nie Cancers 12 (10), 2946, 2020 | 7 | 2020 |
| Reconstructing growth and dynamic trajectories from single-cell transcriptomics data Y Sha, Y Qiu, P Zhou, Q Nie Nature Machine Intelligence 6 (1), 25-39, 2024 | 4 | 2024 |
| exFINDER: identify external communication signals using single-cell transcriptomics data C He, P Zhou, Q Nie Nucleic Acids Research, gkad262, 2023 | 4 | 2023 |
| DURIAN: an integrative deconvolution and imputation method for robust signaling analysis of single-cell transcriptomics data M Karikomi, P Zhou, Q Nie Briefings in bioinformatics 23 (4), bbac223, 2022 | 3 | 2022 |
| On the mathematics of RNA velocity II: algorithmic aspects T Li, Y Wang, Y Guoguo, P Zhou bioRxiv, 2023.06. 09.544270, 2023 | 1 | 2023 |
| Uncovering Minimal Pathways in Melanoma Initiation H Xiao, J Shiu, CF Chen, J Wu, P Zhou, SS Telang, R Ruiz-Vega, Q Nie, ... bioRxiv, 2023.12. 08.570336, 2023 | | 2023 |
| The multiple activations in budding yeast S-phase checkpoint are Poisson processes X Gao, P Zhou, F Li PNAS nexus 2 (11), pgad342, 2023 | | 2023 |
| Yutong Sha1, 2, Shuxiong Wang1, Federico Bocci1, 2, Peijie Zhou1* and Qing Nie1, 2, 3 A Sharma, W Wang, DJ Wooten, FF Clos, P Zhou, Q Nie, Y Sha, S Wang, ... Non-Genetic Heterogeneity in Development and Disease, 2021 | | 2021 |
| Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell–Cell Signaling during EMT Progression. Cancers 2021, 13, 5726 F Bocci, P Zhou, Q Nie s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2021 | | 2021 |
| Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin E Dollinger, D Bergman, P Zhou Cancers, 12 (10), 2020 | | 2020 |
Qing NieUniversity of California, IrvineZweryfikowany adres z uci.edu
