| A stromal cell population that inhibits adipogenesis in mammalian fat depots PC Schwalie, H Dong, M Zachara, J Russeil, D Alpern, N Akchiche, ... Nature 559 (7712), 103-108, 2018 | 381 | 2018 |
| The genetics of transcription factor DNA binding variation B Deplancke, D Alpern, V Gardeux Cell 166 (3), 538-554, 2016 | 362 | 2016 |
| BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing D Alpern, V Gardeux, J Russeil, B Mangeat, ACA Meireles-Filho, ... Genome biology 20, 1-15, 2019 | 159 | 2019 |
| Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium P V’kovski, M Gultom, JN Kelly, S Steiner, J Russeil, B Mangeat, E Cora, ... PLoS biology 19 (3), e3001158, 2021 | 118 | 2021 |
| SMiLE-seq identifies binding motifs of single and dimeric transcription factors A Isakova, R Groux, M Imbeault, P Rainer, D Alpern, R Dainese, ... Nature methods 14 (3), 316-322, 2017 | 114 | 2017 |
| Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress M Weger, D Alpern, A Cherix, S Ghosal, J Grosse, J Russeil, R Gruetter, ... Scientific reports 10 (1), 18308, 2020 | 47 | 2020 |
| TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation D Alpern, D Langer, B Ballester, S Le Gras, C Romier, G Mengus, ... Elife 3, e03613, 2014 | 42 | 2014 |
| The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression A Kaya-Çopur, F Marchiano, MY Hein, D Alpern, J Russeil, NM Luis, ... elife 10, e63726, 2021 | 31 | 2021 |
| Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation D Langer, I Martianov, D Alpern, M Rhinn, C Keime, P Dollé, G Mengus, ... Nature communications 7 (1), 11063, 2016 | 27 | 2016 |
| Dissecting the brown adipogenic regulatory network using integrative genomics RN Pradhan, JJ Bues, V Gardeux, PC Schwalie, D Alpern, W Chen, ... Scientific reports 7 (1), 42130, 2017 | 21 | 2017 |
| Mammalian adipogenesis regulator (Areg) cells use retinoic acid signalling to be non‐and anti‐adipogenic in age‐dependent manner M Zachara, PY Rainer, H Hashimi, JM Russeil, D Alpern, R Ferrero, ... The EMBO Journal 41 (18), e108206, 2022 | 11 | 2022 |
| A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors R Dainese, V Gardeux, G Llimos, D Alpern, JY Jiang, ACA Meireles-Filho, ... Proceedings of the National Academy of Sciences 117 (24), 13828-13838, 2020 | 10 | 2020 |
| Hepatocyte nuclear factor 4 (HNF4) in epithelial development and carcinogenesis NL Lazarevich, DV Al'pern Molekuliarnaia Biologiia 42 (5), 786-797, 2008 | 9 | 2008 |
| Time-and cost-efficient high-throughput transcriptomics enabled by Bulk RNA Barcoding and sequencing D Alpern, V Gardeux, J Russeil, B Deplancke bioRxiv, 256594, 2018 | 8 | 2018 |
| A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation G Llimos, V Gardeux, U Koch, JF Kribelbauer, A Hafner, D Alpern, ... Nature Communications 13 (1), 2042, 2022 | 6 | 2022 |
| Shared acute phase traits in effector and memory human CD8 T cells SAF Marraco, D Alpern, S Lofek, J Lourenco, A Bovay, H Maby-El Hajjami, ... Current Research in Immunology 3, 1-12, 2022 | 2 | 2022 |
| A highly parallel, automated platform enabling individual or sequential ChIP of histone marks and transcription factors R Dainese, V Gardeux, G Llimos, D Alpern, JY Jiang, ... bioRxiv, 728634, 2019 | 2 | 2019 |
| Mammalian adipogenesis regulators (Aregs) exhibit robust non-and anti-adipogenic properties that arise with age and involve retinoic acid signalling M Zachara, PY Rainer, JM Russeil, H Hashimi, D Alpern, R Ferrero, ... bioRxiv, 2021.02. 24.432431, 2021 | 1 | 2021 |
| Multi-well plate lid for single-step pooling of 96 samples for high-throughput barcode-based sequencing S Boder-Pasche, M Demir, S Heub, M Garzuel, R Ischer, D Migliozzi, ... Biomedical Microdevices 26 (2), 18, 2024 | | 2024 |
| Method of preparation of cdna library useful for efficient mrna sequencing and uses thereof D Alpern, R Dainese, B Deplancke, M Demir US Patent App. 18/029,113, 2023 | | 2023 |
