A. Ercument Cicek

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Gultekin OzsoyogluProfessor, Electr. Eng. and Computer Science, Case Western Reserve UniversityVerified email at case.edu
Kathryn RoederProfessor of Statistics, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Xin HeDepartment of Human Genetics, University of ChicagoVerified email at uchicago.edu
Alessio IMPERIALE, MD, PhDHôpitaux Universitaires de StrasbourgVerified email at chru-strasbourg.fr
Z. Meral OzsoyogluProfessor of Computer Science, Case Western Reserve UniversityVerified email at case.edu
Joseph D BuxbaumIcahn School of Medicine at Mount Sinai, New York, NYVerified email at mssm.edu
Ali CakmakAssoc. Prof. of Computer Science, Istanbul Technical UniversityVerified email at itu.edu.tr
Bernie DevlinUniversity of Pittsburgh School of MedicineVerified email at upmc.edu
Erman AydayCase Western Reserve UniversityVerified email at case.edu
Stephan J. SandersProfessor, Oxford and UCSFVerified email at ucsf.edu
James P NoonanAlbert E. Kent Professor of Genetics and Professor of Neuroscience, Yale School of MedicineVerified email at yale.edu
Jeremy WillseyAssistant Professor, UCSFVerified email at ucsf.edu
Yucel SayginProfessor of Computer Science, Sabanci UniversityVerified email at sabanciuniv.edu
En ChengAssociate Professor of Computer Science, The University of AkronVerified email at uakron.edu
Yuwen LiuAGIS, Chinese Academy of Agricultural SciencesVerified email at uchicago.edu
Ranjan K. Dash, PhDMedical College of WisconsinVerified email at mcw.edu
Avi Ma'ayanProfessor, Icahn School of Medicine at Mount Sinai, New York, NYVerified email at mssm.edu
Jing LeiCarnegie Mellon UniversityVerified email at andrew.cmu.edu
Nenad SestanYale UniversityVerified email at yale.edu
Cong LuCarnegie Mellon UniversityVerified email at alumni.cmu.edu

A. Ercument Cicek

Visiting Prof., EPFL; Assoc. Prof., Bilkent University; Adj. Faculty Member, Carnegie Mellon

Verified email at cs.bilkent.edu.tr - Homepage

Computational Biology


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Synaptic, transcriptional and chromatin genes disrupted in autism S De Rubeis, X He, AP Goldberg, CS Poultney, K Samocha, ... Nature 515 (7526), 209-215, 2014	2465	2014
Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci SJ Sanders, X He, AJ Willsey, AG Ercan-Sencicek, KE Samocha, ... Neuron 87 (6), 1215-1233, 2015	1314	2015
Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism FK Satterstrom, JA Kosmicki, J Wang, MS Breen, S De Rubeis, JY An, ... Cell 180 (3), 568-584. e23, 2020	1294	2020
Gene expression elucidates functional impact of polygenic risk for schizophrenia M Fromer, P Roussos, SK Sieberts, JS Johnson, DH Kavanagh, ... Nature neuroscience 19 (11), 1442-1453, 2016	935	2016
DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics L Liu, J Lei, SJ Sanders, AJ Willsey, Y Kou, AE Cicek, L Klei, C Lu, X He, ... Molecular autism 5, 1-18, 2014	136	2014
Landscape of conditional eQTL in dorsolateral prefrontal cortex and co-localization with schizophrenia GWAS A Dobbyn, LM Huckins, J Boocock, LG Sloofman, BS Glicksberg, ... The American Journal of Human Genetics 102 (6), 1169-1184, 2018	115	2018
Ensuring location diversity in privacy-preserving spatio-temporal data publishing AE Cicek, ME Nergiz, Y Saygin The VLDB Journal 23 (4), 609-625, 2014	72	2014
Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex DM Werling, S Pochareddy, J Choi, JY An, B Sheppard, M Peng, Z Li, ... Cell reports 31 (1), 2020	71	2020
Metabolome profiling by HRMAS NMR spectroscopy of pheochromocytomas and paragangliomas detects SDH deficiency: clinical and pathophysiological implications A Imperiale, FM Moussallieh, P Roche, S Battini, AE Cicek, F Sebag, ... Neoplasia 17 (1), 55-65, 2015	67	2015
Re-identification of individuals in genomic data-sharing beacons via allele inference N Von Thenen, E Ayday, AE Cicek Bioinformatics 35 (3), 365-371, 2019	52	2019
Detailed modeling of positive selection improves detection of cancer driver genes S Zhao, J Liu, P Nanga, Y Liu, AE Cicek, N Knoblauch, C He, M Stephens, ... Nature communications 10 (1), 3399, 2019	51	2019
Metabolomics approaches in pancreatic adenocarcinoma: tumor metabolism profiling predicts clinical outcome of patients S Battini, F Faitot, A Imperiale, AE Cicek, C Heimburger, G Averous, ... BMC medicine 15 (1), 1-16, 2017	51	2017
Novel genes for autism implicate both excitatory and inhibitory cell lineages in risk FK Satterstrom, JA Kosmicki, J Wang, MS Breen, SD Rubeis, JY An, ... BioRxiv, 484113, 2018	46	2018
MatchMaker: a deep learning framework for drug synergy prediction HI Kuru, O Tastan, AE Cicek IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (4 …, 2021	45	2021
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu Bioinformatics 36 (12), 3669-3679, 2020	40	2020
Hercules: a profile HMM-based hybrid error correction algorithm for long reads C Firtina, Z Bar-Joseph, C Alkan, AE Cicek Nucleic acids research 46 (21), e125-e125, 2018	34	2018
Robust inference of kinase activity using functional networks S Yılmaz, M Ayati, D Schlatzer, AE Çiçek, MR Chance, M Koyutürk Nature communications 12 (1), 1177, 2021	30	2021
Genome reconstruction attacks against genomic data-sharing beacons K Ayoz, E Ayday, AE Cicek Proceedings of Privacy Enhancing Technologies 2021 (3), 28–48., 2021	27	2021
DeepSide: a deep learning approach for drug side effect prediction OC Uner, HI Kuru, RG Cinbis, O Tastan, AE Cicek IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022	25*	2022
DDD Study S De Rubeis, X He, AP Goldberg, CS Poultney, K Samocha, AE Cicek, ... Homozygosity Mapping Collaborative for Autism, 209-215, 0	24

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