A. Ercument Cicek
A. Ercument Cicek
Visiting Prof., EPFL; Assoc. Prof., Bilkent University; Adj. Faculty Member, Carnegie Mellon
Verified email at - Homepage
Cited by
Cited by
Synaptic, transcriptional and chromatin genes disrupted in autism
S De Rubeis, X He, AP Goldberg, CS Poultney, K Samocha, ...
Nature 515 (7526), 209-215, 2014
Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci
SJ Sanders, X He, AJ Willsey, AG Ercan-Sencicek, KE Samocha, ...
Neuron 87 (6), 1215-1233, 2015
Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism
FK Satterstrom, JA Kosmicki, J Wang, MS Breen, S De Rubeis, JY An, ...
Cell 180 (3), 568-584. e23, 2020
Gene expression elucidates functional impact of polygenic risk for schizophrenia
M Fromer, P Roussos, SK Sieberts, JS Johnson, DH Kavanagh, ...
Nature neuroscience 19 (11), 1442-1453, 2016
DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics
L Liu, J Lei, SJ Sanders, AJ Willsey, Y Kou, AE Cicek, L Klei, C Lu, X He, ...
Molecular autism 5, 1-18, 2014
Landscape of conditional eQTL in dorsolateral prefrontal cortex and co-localization with schizophrenia GWAS
A Dobbyn, LM Huckins, J Boocock, LG Sloofman, BS Glicksberg, ...
The American Journal of Human Genetics 102 (6), 1169-1184, 2018
Ensuring location diversity in privacy-preserving spatio-temporal data publishing
AE Cicek, ME Nergiz, Y Saygin
The VLDB Journal 23 (4), 609-625, 2014
Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex
DM Werling, S Pochareddy, J Choi, JY An, B Sheppard, M Peng, Z Li, ...
Cell reports 31 (1), 2020
Metabolome profiling by HRMAS NMR spectroscopy of pheochromocytomas and paragangliomas detects SDH deficiency: clinical and pathophysiological implications
A Imperiale, FM Moussallieh, P Roche, S Battini, AE Cicek, F Sebag, ...
Neoplasia 17 (1), 55-65, 2015
Re-identification of individuals in genomic data-sharing beacons via allele inference
N Von Thenen, E Ayday, AE Cicek
Bioinformatics 35 (3), 365-371, 2019
Detailed modeling of positive selection improves detection of cancer driver genes
S Zhao, J Liu, P Nanga, Y Liu, AE Cicek, N Knoblauch, C He, M Stephens, ...
Nature communications 10 (1), 3399, 2019
Metabolomics approaches in pancreatic adenocarcinoma: tumor metabolism profiling predicts clinical outcome of patients
S Battini, F Faitot, A Imperiale, AE Cicek, C Heimburger, G Averous, ...
BMC medicine 15 (1), 1-16, 2017
Novel genes for autism implicate both excitatory and inhibitory cell lineages in risk
FK Satterstrom, JA Kosmicki, J Wang, MS Breen, SD Rubeis, JY An, ...
BioRxiv, 484113, 2018
MatchMaker: a deep learning framework for drug synergy prediction
HI Kuru, O Tastan, AE Cicek
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (4 …, 2021
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu
Bioinformatics 36 (12), 3669-3679, 2020
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
C Firtina, Z Bar-Joseph, C Alkan, AE Cicek
Nucleic acids research 46 (21), e125-e125, 2018
Robust inference of kinase activity using functional networks
S Yılmaz, M Ayati, D Schlatzer, AE Çiçek, MR Chance, M Koyutürk
Nature communications 12 (1), 1177, 2021
Genome reconstruction attacks against genomic data-sharing beacons
K Ayoz, E Ayday, AE Cicek
Proceedings of Privacy Enhancing Technologies 2021 (3), 28–48., 2021
DeepSide: a deep learning approach for drug side effect prediction
OC Uner, HI Kuru, RG Cinbis, O Tastan, AE Cicek
IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022
DDD Study
S De Rubeis, X He, AP Goldberg, CS Poultney, K Samocha, AE Cicek, ...
Homozygosity Mapping Collaborative for Autism, 209-215, 0
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