| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457, 2017 | 386 | 2017 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410, 2018 | 140 | 2018 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... mSystems 3 (3), e00031-18, 2018 | 69 | 2018 |
| Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse MR Kantorovitz, M Kazemian, S Kinston, D Miranda-Saavedra, Q Zhu, ... Developmental cell 17 (4), 568-579, 2009 | 54 | 2009 |
| Fleas (Siphonaptera) are Cretaceous, and evolved with Theria Q Zhu, MW Hastriter, MF Whiting, K Dittmar Molecular phylogenetics and evolution 90, 129-139, 2015 | 42 | 2015 |
| Bartonella spp. in fruit bats and blood-feeding ectoparasites in Madagascar CE Brook, Y Bai, AP Dobson, LM Osikowicz, HC Ranaivoson, Q Zhu, ... PLoS neglected tropical diseases 9 (2), e0003532, 2015 | 39 | 2015 |
| HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers Q Zhu, M Kosoy, K Dittmar BMC genomics 15 (1), 717, 2014 | 37 | 2014 |
| Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison M Kazemian, Q Zhu, MS Halfon, S Sinha Nucleic acids research 39 (22), 9463-9472, 2011 | 27 | 2011 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 26 | 2019 |
| Origin of microbial biomineralization and magnetotaxis during the Archean W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ... Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017 | 22 | 2017 |
| Recent duplication and positive selection of the GAGE gene family Y Liu, Q Zhu, N Zhu Genetica 133 (1), 31-35, 2008 | 18 | 2008 |
| Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ... European Psychiatry 53, 37-45, 2018 | 17 | 2018 |
| Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota ZS Hua, YN Qu, Q Zhu, EM Zhou, YL Qi, YR Yin, YZ Rao, Y Tian, YX Li, ... Nature communications 9 (1), 2832, 2018 | 17 | 2018 |
| Creating a 3D microbial and chemical snapshot of a human habitat CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ... Scientific reports 8 (1), 3669, 2018 | 16 | 2018 |
| Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... MSystems 3 (6), e00069-18, 2018 | 15 | 2018 |
| Horizontal transfers and gene losses in the phospholipid pathway of Bartonella reveal clues about early ecological niches Q Zhu, M Kosoy, KJ Olival, K Dittmar Genome biology and evolution 6 (8), 2156-2169, 2014 | 15 | 2014 |
| KatharoSeq enables high-throughput microbiome analysis from low-biomass samples JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ... MSystems 3 (3), e00218-17, 2018 | 13 | 2018 |
| American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18 D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... | 12 | 2018 |
| FXR regulates intestinal cancer stem cell proliferation T Fu, S Coulter, E Yoshihara, TG Oh, S Fang, F Cayabyab, Q Zhu, ... Cell 176 (5), 1098-1112. e18, 2019 | 11 | 2019 |
| Methods for phylogenetic analysis of microbiome data AD Washburne, JT Morton, J Sanders, D McDonald, Q Zhu, AM Oliverio, ... Nature microbiology 3 (6), 652, 2018 | 11 | 2018 |