Qiyun Zhu
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
Evaluating the information content of shallow shotgun metagenomics
B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ...
MSystems 3 (6), 2018
FXR regulates intestinal cancer stem cell proliferation
T Fu, S Coulter, E Yoshihara, TG Oh, S Fang, F Cayabyab, Q Zhu, ...
Cell 176 (5), 1098-1112. e18, 2019
Origin of microbial biomineralization and magnetotaxis during the Archean
W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ...
Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017
Fleas (Siphonaptera) are Cretaceous, and evolved with Theria
Q Zhu, MW Hastriter, MF Whiting, K Dittmar
Molecular Phylogenetics and Evolution 90, 129-139, 2015
Bartonella spp. in fruit bats and blood-feeding ectoparasites in Madagascar
CE Brook, Y Bai, AP Dobson, LM Osikowicz, HC Ranaivoson, Q Zhu, ...
PLoS Negl Trop Dis 9 (2), e0003532, 2015
Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse
MR Kantorovitz, M Kazemian, S Kinston, D Miranda-Saavedra, Q Zhu, ...
Developmental cell 17 (4), 568-579, 2009
HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers
Q Zhu, M Kosoy, K Dittmar
BMC genomics 15 (1), 1-18, 2014
KatharoSeq enables high-throughput microbiome analysis from low-biomass samples
JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ...
MSystems 3 (3), 2018
Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis
Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ...
European Psychiatry 53, 37-45, 2018
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 1-14, 2019
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota
ZS Hua, YN Qu, Q Zhu, EM Zhou, YL Qi, YR Yin, YZ Rao, Y Tian, YX Li, ...
Nature communications 9 (1), 1-11, 2018
Methods for phylogenetic analysis of microbiome data
AD Washburne, JT Morton, J Sanders, D McDonald, Q Zhu, AM Oliverio, ...
Nature microbiology 3 (6), 652-661, 2018
American Gut: an open platform for citizen science microbiome research. mSystems 3: e00031-18
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison
M Kazemian, Q Zhu, MS Halfon, S Sinha
Nucleic acids research 39 (22), 9463-9472, 2011
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Articles 1–20