| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 5308 | 2019 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 1376 | 2017 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 884 | 2018 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 722 | 2018 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), e00031-18, 2018 | 379 | 2018 |
| Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020 | 289 | 2020 |
| FXR regulates intestinal cancer stem cell proliferation T Fu, S Coulter, E Yoshihara, TG Oh, S Fang, F Cayabyab, Q Zhu, ... Cell 176 (5), 1098-1112. e18, 2019 | 169 | 2019 |
| Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... Msystems 3 (6), e00069-18, 2018 | 152 | 2018 |
| Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 1-10, 2020 | 124 | 2020 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 1-14, 2019 | 106 | 2019 |
| Origin of microbial biomineralization and magnetotaxis during the Archean W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ... Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017 | 85 | 2017 |
| High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing SM Karst, RM Ziels, RH Kirkegaard, EA Sřrensen, D McDonald, Q Zhu, ... Nature methods 18 (2), 165-169, 2021 | 78 | 2021 |
| QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 75 | 2020 |
| Fleas (Siphonaptera) are Cretaceous, and evolved with Theria Q Zhu, MW Hastriter, MF Whiting, K Dittmar Molecular Phylogenetics and Evolution 90, 129-139, 2015 | 75 | 2015 |
| HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers Q Zhu, M Kosoy, K Dittmar BMC genomics 15 (1), 1-18, 2014 | 74 | 2014 |
| KatharoSeq enables high-throughput microbiome analysis from low-biomass samples JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ... MSystems 3 (3), e00218-17, 2018 | 70 | 2018 |
| Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota ZS Hua, YN Qu, Q Zhu, EM Zhou, YL Qi, YR Yin, YZ Rao, Y Tian, YX Li, ... Nature communications 9 (1), 1-11, 2018 | 69 | 2018 |
| Bartonella spp. in Fruit Bats and Blood-Feeding Ectoparasites in Madagascar CE Brook, Y Bai, AP Dobson, LM Osikowicz, HC Ranaivoson, Q Zhu, ... PLoS Neglected Tropical Diseases 9 (2), e0003532, 2015 | 69 | 2015 |
| Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse MR Kantorovitz, M Kazemian, S Kinston, D Miranda-Saavedra, Q Zhu, ... Developmental cell 17 (4), 568-579, 2009 | 64 | 2009 |
| Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis Y He, T Kosciolek, J Tang, Y Zhou, Z Li, X Ma, Q Zhu, N Yuan, L Yuan, ... European Psychiatry 53, 37-45, 2018 | 63 | 2018 |
