| Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data A Pratapa, AP Jalihal, JN Law, A Bharadwaj, TM Murali Nature Methods 17 (2), 147-154, 2020 | 511 | 2020 |
| Image-based cell phenotyping with deep learning. A Pratapa, M Doron, JC Caicedo Current Opinion in Chemical Biology 65, 9-17, 2021 | 68 | 2021 |
| Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks A Pratapa, S Balachandran, K Raman Bioinformatics 31 (20), 3299-3305, 2015 | 60 | 2015 |
| Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease MJ Mason, C Schinke, CLP Eng, F Towfic, F Gruber, A Dervan, BS White, ... Leukemia 34 (7), 1866-1874, 2020 | 40 | 2020 |
| Mapping the spatial proteome of head and neck tumors: key immune mediators and metabolic determinants in the tumor microenvironment N Jhaveri, B Ben Cheikh, N Nikulina, N Ma, D Klymyshyn, J DeRosa, ... GEN Biotechnology 2 (5), 418-434, 2023 | 6 | 2023 |
| Reconstructing signaling pathways using regular language constrained paths MJ Wagner, A Pratapa, TM Murali Bioinformatics 35 (14), i624-i633, 2019 | 6 | 2019 |
| Computational prediction of synthetic lethals in genome-scale metabolic models using fast-SL K Raman, A Pratapa, O Mohite, S Balachandran Metabolic network reconstruction and modeling: methods and protocols, 315-336, 2018 | 6 | 2018 |
| Out of distribution generalization via interventional style transfer in single-cell microscopy WM Pernice, M Doron, A Quach, A Pratapa, S Kenjeyev, N De Veaux, ... Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2023 | 5 | 2023 |
| Deep ultrahigh-plex spatial phenotyping of human cancer tissues N Jhaveri, N Nikulina, H Zong, N Ma, BB Cheikh, A Pratapa, Y Kassim, ... Cancer Research 82 (12_Supplement), 3877-3877, 2022 | 5 | 2022 |
| CrossPlan: systematic planning of genetic crosses to validate mathematical models A Pratapa, N Adames, P Kraikivski, N Franzese, JJ Tyson, J Peccoud, ... Bioinformatics 34 (13), 2237–2244, 2018 | 3 | 2018 |
| Single-cell spatial proteomic analysis by multiplexed imaging enables identification of microglial heterogeneity in Alzheimer’s disease human brain P Sanchez-Molina, A Pratapa, N Nikulina, B Cheikh, J Singh, A Dhawan, ... | 2 | 2023 |
| Deep spatial phenotyping of microglial populations and pathological features in Alzheimer’s disease brains using CODEX Multiplexed Imaging P Sanchez‐Molina, A Pratapa, J Singh, A Chiot, A Bogachuk, N Nikulina, ... Alzheimer's & Dementia 18, e066433, 2022 | 1 | 2022 |
| 654MO High dimensional immuno-phenotyping of immunotherapy response in head and neck cancer KJ O'Byrne, N Ma, H Sadeghirad, N Jhaveri, J Monkman, A Pratapa, ... Annals of Oncology 33, S841, 2022 | 1 | 2022 |
| Integration of high-plex tumor-Immune phenotyping and checkpoint interactions for deeper spatial characterization of human cancer tissues S Bodbin, N Ma, A Pratapa, N Nikulina, J Monkman, N Jhaveri, H Elofsson, ... Cancer Research 84 (6_Supplement), 1525-1525, 2024 | | 2024 |
| Mutational analysis and spatial phenotyping to decipher racial disparities in pancreatic adenocarcinoma DJ Salas-Escabillas, N Ma, BB Cheikh, A Pratapa, T Pichardo, K Langley, ... Cancer Research 84 (6_Supplement), 3651-3651, 2024 | | 2024 |
| Ultrahigh-plex spatial phenotyping of head and neck cancer tissue uncovers multiomic signatures of immunotherapy response A Pratapa, L Hernandez, BB Cheikh, N Jhaveri, A Kulasinghe Cancer Research 84 (6_Supplement), 5503-5503, 2024 | | 2024 |
| Comparative spatial analyses of the tumor immune landscape in different mouse models of glioblastoma D Klymyshyn, N Jhaveri, A Pratapa, N Nikulina, TH Tam, N Nelson, ... Cancer Research 84 (6_Supplement), 3763-3763, 2024 | | 2024 |
| Integrating ultrahigh-plex spatial phenotyping: From discovery to clinical applications A Pratapa, N Ma, N Jhaveri Cancer Research 84 (6_Supplement), 5504-5504, 2024 | | 2024 |
| A spatio-temporal approach to mapping the dynamics of cutaneous squamous cell carcinoma progression and immunotherapy response: A journey through TiME N Jhaveri, B Ben Cheikh, D Klymyshyn, N Ma, A Pratapa, J Monkman, ... Cancer Research 84 (6_Supplement), 6872-6872, 2024 | | 2024 |
| 124 Location, location, location: spatial analysis of ultrahigh-plex immunofluorescence panel in head and neck cancer Q Vu, N Jhaveri, A Pratapa, C Paustian, T Moudgil, V Rajamanickam, ... Journal for ImmunoTherapy of Cancer 11 (Suppl 1), 2023 | | 2023 |
T. M. MuraliDepartment of Computer Science, Virginia TechZweryfikowany adres z cs.vt.edu
