Leena Salmela

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Jorma TarhioProfessor Emeritus, Aalto UniversityVerified email at aalto.fi
Veli MäkinenProfessor of Computer Science, University of HelsinkiVerified email at helsinki.fi
Eric RivalsLIRMM, Centre National Recherche Scientifique (CNRS) & Univ. Montpellier, FranceVerified email at lirmm.fr
Riku WalveUniversity of HelsinkiVerified email at cs.helsinki.fi
Simon J. PuglisiProfessor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Christina BoucherUniversity of FloridaVerified email at ufl.edu
Alexandru I. TomescuDepartment of Computer Science, University of HelsinkiVerified email at helsinki.fi
Niko VälimäkiPostdoctoral researcher, University of HelsinkiVerified email at cs.helsinki.fi
Travis GagieAssociate Professor at Dalhousie UniversityVerified email at dal.ca
Gonzalo NavarroUniversity of ChileVerified email at dcc.uchile.cl
Jan SchröderPostdoc researcher, Monash UniversityVerified email at monash.edu
Pasi RastasResearch Associate, University of Helsinki, Institute of BiotechnologyVerified email at helsinki.fi
Martin D MuggliAlumniVerified email at alumni.colostate.edu
Bahar AlipanahiDelfi DiagnosticsVerified email at delfidiagnostics.com
Francisco ClaudeLinkedInVerified email at recoded.cl
Kristoffer SahlinAssistant Professor at Department of Mathematics, Stockholm UniversityVerified email at math.su.se
Petri AuvinenInstitute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Mikko FrilanderGroup leader/Research Director, Institute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Patrik KoskinenLAB - University of Applied SciencesVerified email at lab.fi
Hanski IProfessor of Ecology, University of HelsinkiVerified email at helsinki.fi

Leena Salmela

University of Helsinki

Verified email at cs.helsinki.fi - Homepage

Bioinformatics String algorithms


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LoRDEC: accurate and efficient long read error correction L Salmela, E Rivals Bioinformatics 30 (24), 3506-3514, 2014	672	2014
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ... Nature communications 5 (1), 4737, 2014	225	2014
Correcting errors in short reads by multiple alignments L Salmela, J Schröder Bioinformatics 27 (11), 1455-1461, 2011	211	2011
Correction of sequencing errors in a mixed set of reads L Salmela Bioinformatics 26 (10), 1284-1290, 2010	150	2010
Accurate self-correction of errors in long reads using de Bruijn graphs L Salmela, R Walve, E Rivals, E Ukkonen Bioinformatics 33 (6), 799-806, 2017	143	2017
Multipattern string matching with q-grams L Salmela, J Tarhio, J Kytöjoki Journal of Experimental Algorithmics (JEA) 11, 1.1-es, 2007	119	2007
Fast scaffolding with small independent mixed integer programs L Salmela, V Mäkinen, N Välimäki, J Ylinen, E Ukkonen Bioinformatics 27 (23), 3259-3265, 2011	96	2011
Normalized N50 assembly metric using gap-restricted co-linear chaining V Mäkinen, L Salmela, J Ylinen BMC bioinformatics 13, 1-5, 2012	44	2012
Bit-parallel search algorithms for long patterns B Ďurian, H Peltola, L Salmela, J Tarhio Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010	40	2010
Flight‐induced changes in gene expression in the Glanville fritillary butterfly J Kvist, ALK Mattila, P Somervuo, V Ahola, P Koskinen, L Paulin, ... Molecular Ecology 24 (19), 4886-4900, 2015	38	2015
mpscan: Fast Localisation of Multiple Reads in Genomes E Rivals, L Salmela, P Kiiskinen, P Kalsi, J Tarhio Algorithms in Bioinformatics: 9th International Workshop, WABI 2009 …, 2009	35	2009
Tuning string matching for huge pattern sets J Kytöjoki, L Salmela, J Tarhio Combinatorial Pattern Matching: 14th Annual Symposium, CPM 2003 Morelia …, 2003	31	2003
Gap filling as exact path length problem L Salmela, K Sahlin, V Mäkinen, AI Tomescu Journal of Computational Biology 23 (5), 347-361, 2016	28	2016
Forbidden patterns J Fischer, T Gagie, T Kopelowitz, M Lewenstein, V Mäkinen, L Salmela, ... Latin American Symposium on Theoretical Informatics, 327-337, 2012	27	2012
String matching with alphabet sampling F Claude, G Navarro, H Peltola, L Salmela, J Tarhio Journal of Discrete Algorithms 11, 37-50, 2012	27	2012
Fast parameterized matching with q-grams L Salmela, J Tarhio Journal of Discrete Algorithms 6 (3), 408-419, 2008	22	2008
Approximate Boyer-Moore string matching for small alphabets L Salmela, J Tarhio, P Kalsi Algorithmica 58, 591-609, 2010	21	2010
Indexing variable length substrings for exact and approximate matching G Navarro, L Salmela International Symposium on String Processing and Information Retrieval, 214-221, 2009	21	2009
Error correcting optical mapping data K Mukherjee, D Washimkar, MD Muggli, L Salmela, C Boucher GigaScience 7 (6), giy061, 2018	16	2018
Optical map guided genome assembly M Leinonen, L Salmela BMC bioinformatics 21, 1-19, 2020	13	2020

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