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Sebastian Kmiecik
Sebastian Kmiecik
Laboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsaw
Verified email at chem.uw.edu.pl - Homepage
Title
Cited by
Cited by
Year
Coarse-Grained Protein Models and Their Applications
S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski
Chemical Reviews 116 (14), 7898-7936, 2016
6922016
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site
M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik
Nucleic acids research 43 (W1), W419-W424, 2015
2922015
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures
R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura
Nucleic acids research 43 (W1), W306-W313, 2015
1772015
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures
A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ...
Nucleic acids research 46 (W1), W338-W343, 2018
1762018
Protein–peptide docking: opportunities and challenges
M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ...
Drug discovery today 23 (8), 1530-1537, 2018
1632018
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ...
Methods 93, 72-83, 2016
1402016
CABS-flex: server for fast simulation of protein structure fluctuations
M Jamroz, A Kolinski, S Kmiecik
Nucleic acids research, W427-W431, 2013
1242013
Folding pathway of the B1 domain of protein G explored by multiscale modeling
S Kmiecik, A Kolinski
Biophysical journal 94 (3), 726-736, 2008
1222008
Characterization of protein-folding pathways by reduced-space modeling
S Kmiecik, A Kolinski
Proceedings of the National Academy of Sciences 104 (30), 12330-12335, 2007
1092007
CABS-fold: server for the de novo and consensus-based prediction of protein structure
M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski
Nucleic acids research 41 (W1), W406-W411, 2013
872013
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field
M Jamroz, M Orozco, A Kolinski, S Kmiecik
Journal of Chemical Theory and Computation 9 (1), 119-125, 2013
782013
CABS-flex predictions of protein flexibility compared with NMR ensembles
M Jamroz, A Kolinski, S Kmiecik
Bioinformatics 30 (15), 2150-2154, 2014
652014
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility
M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik
Bioinformatics 35 (4), 694-695, 2019
592019
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field
S Kmiecik, D Gront, A Kolinski
BMC structural biology 7 (1), 1-11, 2007
592007
Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models
S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski
International journal of molecular sciences 19 (11), 3496, 2018
502018
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility
A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura
Nucleic acids research 47 (W1), W300–W307, 2019
482019
Simulation of chaperonin effect on protein folding: a shift from nucleation–condensation to framework mechanism
S Kmiecik, A Kolinski
Journal of the American Chemical Society 133 (26), 10283-10289, 2011
482011
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations
M Kurcinski, A Kolinski, S Kmiecik
Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014
412014
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction
MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ...
Scientific reports 6 (1), 1-8, 2016
392016
Modeling of disordered protein structures using Monte Carlo simulations and knowledge-based statistical force fields
MP Ciemny, AE Badaczewska-Dawid, M Pikuzinska, A Kolinski, ...
International journal of molecular sciences 20(3), 606, 2019
362019
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