Sebastian Kmiecik

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Andrzej KolinskiProfessor, University of WarsawVerified email at chem.uw.edu.pl
Mateusz KurcinskiUniwersytet WarszawskiVerified email at chem.uw.edu.pl
Michal KolinskiBioinformatics Laboratory, Mossakowski Medical Research Institute Polish Academy of SciencesVerified email at imdik.pan.pl
Michal JamrozUniversity of WarsawVerified email at chem.uw.edu.pl
Maciej BlaszczykUniversity of WarsawVerified email at chem.uw.edu.pl
Aleksandra E. Badaczewska-DawidResearch Scientist IV, Genome Informatics Facility, Iowa State UniversityVerified email at iastate.edu
Dominik GrontUniversity of Warsaw, Faculty of ChemistryVerified email at chem.uw.edu.pl
Maciej Paweł CiemnyUniversity of WarsawVerified email at fuw.edu.pl
Maksim KouzaFaculty of Chemistry, University of WarsawVerified email at chem.uw.edu.pl
Salvador VenturaInstitute of Biotechnology and Biomedicine (IBB), Universitat Autonoma de BarcelonaVerified email at uab.es
Lukasz WieteskaResearch Associate, University of PittsburghVerified email at pitt.edu
Jordi PujolsUniversitat Autònoma de BarcelonaVerified email at uab.cat
Karol KamelInstitute of Bioorganic Chemistry, PASVerified email at ibch.poznan.pl
Ora Schueler-FurmanHebrew University, Jerusalem, IsraelVerified email at mail.huji.ac.il
Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Institute for Genomic Medicine, NCHVerified email at osu.edu
Valentin IglesiasInstitut de Biotecnologia i de Biomedicina and Departament de Bioquímica i Biologia Molecular (UABVerified email at uab.cat
Nawsad AlamUniversity of OxfordVerified email at bioch.ox.ac.uk
Modesto OrozcoProfessor of Biochemistry, Universtity of BarcelonaVerified email at irbbarcelona.org
Mai Suan LiProfessor of Physics, Institute of Physics, Polish Academy of SciencesVerified email at ifpan.edu.pl
Irina A. BuhimschiUniversity of Illinois at ChicagoVerified email at uic.edu

Sebastian Kmiecik

Laboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsaw

Verified email at chem.uw.edu.pl - Homepage

structural biology protein modeling peptide docking drug design bioinformatics


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Coarse-Grained Protein Models and Their Applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical Reviews 116 (14), 7898-7936, 2016	692	2016
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015	292	2015
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura Nucleic acids research 43 (W1), W306-W313, 2015	177	2015
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018	176	2018
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018	163	2018
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016	140	2016
CABS-flex: server for fast simulation of protein structure fluctuations M Jamroz, A Kolinski, S Kmiecik Nucleic acids research, W427-W431, 2013	124	2013
Folding pathway of the B1 domain of protein G explored by multiscale modeling S Kmiecik, A Kolinski Biophysical journal 94 (3), 726-736, 2008	122	2008
Characterization of protein-folding pathways by reduced-space modeling S Kmiecik, A Kolinski Proceedings of the National Academy of Sciences 104 (30), 12330-12335, 2007	109	2007
CABS-fold: server for the de novo and consensus-based prediction of protein structure M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski Nucleic acids research 41 (W1), W406-W411, 2013	87	2013
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field M Jamroz, M Orozco, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 9 (1), 119-125, 2013	78	2013
CABS-flex predictions of protein flexibility compared with NMR ensembles M Jamroz, A Kolinski, S Kmiecik Bioinformatics 30 (15), 2150-2154, 2014	65	2014
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik Bioinformatics 35 (4), 694-695, 2019	59	2019
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field S Kmiecik, D Gront, A Kolinski BMC structural biology 7 (1), 1-11, 2007	59	2007
Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski International journal of molecular sciences 19 (11), 3496, 2018	50	2018
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura Nucleic acids research 47 (W1), W300–W307, 2019	48	2019
Simulation of chaperonin effect on protein folding: a shift from nucleation–condensation to framework mechanism S Kmiecik, A Kolinski Journal of the American Chemical Society 133 (26), 10283-10289, 2011	48	2011
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations M Kurcinski, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014	41	2014
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ... Scientific reports 6 (1), 1-8, 2016	39	2016
Modeling of disordered protein structures using Monte Carlo simulations and knowledge-based statistical force fields MP Ciemny, AE Badaczewska-Dawid, M Pikuzinska, A Kolinski, ... International journal of molecular sciences 20(3), 606, 2019	36	2019

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