Sebastian Kmiecik

Cited by

	All	Since 2015
Citations	2231	1844
h-index	23	20
i10-index	37	34

520

260

130

390

2007200820092010201120122013201420152016201720182019202018 40 35 36 36 50 55 106 73 185 292 305 518 465

Co-authors

Andrzej KolinskiProfessor, University of WarsawVerified email at chem.uw.edu.pl
Mateusz KurcinskiUniwersytet WarszawskiVerified email at chem.uw.edu.pl
Michal JamrozUniversity of WarsawVerified email at chem.uw.edu.pl
dgrontUniversity of Warsaw, Faculty of ChemistryVerified email at chem.uw.edu.pl
Maciej BlaszczykUniversity of WarsawVerified email at chem.uw.edu.pl
Michal KolinskiBioinformatics Laboratory, Mossakowski Medical Research Centre Polish Academy of SciencesVerified email at imdik.pan.pl
Aleksandra E. Badaczewska-DawidPostdoc Research Associate, Iowa State UniversityVerified email at iastate.edu
Maciej Paweł CiemnyUniversity of WarsawVerified email at fuw.edu.pl
Maksim KouzaFaculty of Chemistry, University of WarsawVerified email at chem.uw.edu.pl
Lukasz WieteskaResearch Associate, University of PittsburghVerified email at pitt.edu
Salvador VenturaInstitute of Biotechnology and Biomedicine (IBB), Universitat Autonoma de BarcelonaVerified email at uab.es
Jordi PujolsUniversitat Autònoma de BarcelonaVerified email at uab.cat
Ora Schueler-FurmanHebrew University, Jerusalem, IsraelVerified email at mail.huji.ac.il
Karol KamelInstitute of Bioorganic Chemistry, PASVerified email at ibch.poznan.pl
Andrzej KloczkowskiProfessor of Pediatrics, The Ohio State University, Battelle Center for Mathematical Medicine, NCHVerified email at osu.edu
Nawsad AlamUniversity of OxfordVerified email at bioch.ox.ac.uk
Modesto OrozcoProfessor of Biochemistry, Universtity of BarcelonaVerified email at irbbarcelona.org
Valentin IglesiasPhD Researcher, Institut de Biotecnologia i de Biomedicina and Departament de Bioquímica i BiologiaVerified email at uab.cat
Mai Suan LiProfessor of Physics, Institute of Physics, Polish Academy of SciencesVerified email at ifpan.edu.pl
Irina A. BuhimschiUniversity of Illinois at ChicagoVerified email at uic.edu

Sebastian Kmiecik

Laboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsaw

Verified email at chem.uw.edu.pl - Homepage

structural biology protein modeling peptide docking drug design bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Coarse-Grained Protein Models and Their Applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical Reviews 116 (14), 7898-7936, 2016	401	2016
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015	215	2015
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura Nucleic acids research 43 (W1), W306-W313, 2015	129	2015
Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates D Gront, S Kmiecik, A Kolinski Journal of computational chemistry 28 (9), 1593-1597, 2007	123	2007
Folding pathway of the B1 domain of protein G explored by multiscale modeling S Kmiecik, A Kolinski Biophysical journal 94 (3), 726-736, 2008	115	2008
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016	111	2016
CABS-flex: server for fast simulation of protein structure fluctuations M Jamroz, A Kolinski, S Kmiecik Nucleic acids research, W427-W431, 2013	106	2013
Characterization of protein-folding pathways by reduced-space modeling S Kmiecik, A Kolinski Proceedings of the National Academy of Sciences 104 (30), 12330-12335, 2007	101	2007
Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018	76	2018
CABS-fold: server for the de novo and consensus-based prediction of protein structure M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski Nucleic acids research 41 (W1), W406-W411, 2013	76	2013
Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field S Kmiecik, D Gront, A Kolinski BMC structural biology 7 (1), 1-11, 2007	55	2007
Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field M Jamroz, M Orozco, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 9 (1), 119-125, 2013	54	2013
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018	52	2018
CABS-flex predictions of protein flexibility compared with NMR ensembles M Jamroz, A Kolinski, S Kmiecik Bioinformatics 30 (15), 2150-2154, 2014	51	2014
Simulation of chaperonin effect on protein folding: a shift from nucleation–condensation to framework mechanism S Kmiecik, A Kolinski Journal of the American Chemical Society 133 (26), 10283-10289, 2011	42	2011
Mechanism of folding and binding of an intrinsically disordered protein as revealed by ab initio simulations M Kurcinski, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 10 (6), 2224-2231, 2014	37	2014
Structure prediction of the second extracellular loop in G-protein-coupled receptors S Kmiecik, M Jamroz, M Kolinski Biophysical Journal 106 (11), 2408–2416, 2014	32	2014
Optimization of protein models D Gront, S Kmiecik, M Blaszczyk, D Ekonomiuk, A Koliński Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (3), 479–493, 2012	32	2012
Highly flexible protein-peptide docking using CABS-dock MP Ciemny, M Kurcinski, KJ Kozak, A Kolinski, S Kmiecik Modeling Peptide-Protein Interactions: Methods and Protocols 1561, 2017	31	2017
Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction MP Ciemny, A Debinski, M Paczkowska, A Kolinski, M Kurcinski, ... Scientific reports 6, 37532, 2016	31	2016

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