Julian König
Julian König
Institute of Molecular Biology, Mainz
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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909-915, 2010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ...
Nature neuroscience 14 (4), 452-458, 2011
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
iCLIP: Protein–RNA interactions at nucleotide resolution
I Huppertz, J Attig, A D’Ambrogio, LE Easton, CR Sibley, Y Sugimoto, ...
Methods 65 (3), 274-287, 2014
Protein–RNA interactions: new genomic technologies and perspectives
J König, K Zarnack, NM Luscombe, J Ule
Nature Reviews Genetics 13 (2), 77-83, 2012
A reverse genetic approach for generating gene replacement mutants in Ustilago maydis
A Brachmann, J König, C Julius, M Feldbrügge
Molecular Genetics and Genomics 272, 216-226, 2004
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Y Sugimoto, J König, S Hussain, B Zupan, T Curk, M Frye, J Ule
Genome biology 13 (8), 1-13, 2012
iCLIP-Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Journal of visualized experiments: JoVE, 2011
Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB
MB Coelho, J Attig, N Bellora, J König, M Hallegger, M Kayikci, E Eyras, ...
The EMBO journal 34 (5), 653-668, 2015
The RNA-binding protein Rrm4 is essential for polarity in Ustilago maydis and shuttles along microtubules
P Becht, J König, M Feldbrügge
Journal of cell science 119 (23), 4964-4973, 2006
Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation
S Baumann, J König, J Koepke, M Feldbrügge
EMBO reports 15 (1), 94-102, 2014
The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs
J König, S Baumann, J Koepke, T Pohlmann, K Zarnack, M Feldbrügge
The EMBO journal 28 (13), 1855-1866, 2009
Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L
O Rossbach, LH Hung, E Khrameeva, S Schreiner, J König, T Curk, ...
RNA biology 11 (2), 146-155, 2014
Insights into the design and interpretation of iCLIP experiments
N Haberman, I Huppertz, J Attig, J König, Z Wang, C Hauer, MW Hentze, ...
Genome biology 18, 1-21, 2017
In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors
FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ...
Genome research 28 (5), 699-713, 2018
Requirement of heterogeneous nuclear ribonucleoprotein C for BRCA gene expression and homologous recombination
RW Anantha, AL Alcivar, J Ma, H Cai, S Simhadri, J Ule, J König, B Xia
PloS one 8 (4), e61368, 2013
Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila
L Worpenberg, C Paolantoni, S Longhi, MM Mulorz, T Lence, HH Wessels, ...
The EMBO journal 40 (4), e104975, 2021
The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1
J Koepke, F Kaffarnik, C Haag, K Zarnack, NM Luscombe, J König, J Ule, ...
Molecular & cellular proteomics 10 (12), 2011
Splicing repression allows the gradual emergence of new Alu-exons in primate evolution
J Attig, I Ruiz de los Mozos, N Haberman, Z Wang, W Emmett, K Zarnack, ...
elife 5, e19545, 2016
Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning
N Körtel, C Rücklé, Y Zhou, A Busch, P Hoch-Kraft, FXR Sutandy, J Haase, ...
Nucleic acids research 49 (16), e92-e92, 2021
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