| Real-world design and evaluation of compiler-managed GPU redundant multithreading J Wadden, A Lyashevsky, S Gurumurthi, V Sridharan, K Skadron ACM SIGARCH Computer Architecture News 42 (3), 73-84, 2014 | 103 | 2014 |
| ANMLzoo: a benchmark suite for exploring bottlenecks in automata processing engines and architectures J Wadden, V Dang, N Brunelle, T Tracy II, D Guo, E Sadredini, K Wang, ... 2016 IEEE International Symposium on Workload Characterization (IISWC), 1-12, 2016 | 80 | 2016 |
| An overview of micron's automata processor K Wang, K Angstadt, C Bo, N Brunelle, E Sadredini, T Tracy, J Wadden, ... Proceedings of the Eleventh IEEE/ACM/IFIP International Conference on …, 2016 | 54 | 2016 |
| Squigglefilter: An accelerator for portable virus detection T Dunn, H Sadasivan, J Wadden, K Goliya, KY Chen, D Blaauw, R Das, ... MICRO-54: 54th Annual IEEE/ACM International Symposium on Microarchitecture …, 2021 | 50 | 2021 |
| Serial H3K27M cell-free tumor DNA (cf-tDNA) tracking predicts ONC201 treatment response and progression in diffuse midline glioma E Cantor, K Wierzbicki, RS Tarapore, K Ravi, C Thomas, R Cartaxo, ... Neuro-oncology 24 (8), 1366-1374, 2022 | 46 | 2022 |
| SquiggleNet: real-time, direct classification of nanopore signals Y Bao, J Wadden, JR Erb-Downward, P Ranjan, W Zhou, TL McDonald, ... Genome biology 22, 1-16, 2021 | 43 | 2021 |
| REAPR: Reconfigurable engine for automata processing T Xie, V Dang, J Wadden, K Skadron, M Stan 2017 27th International Conference on Field Programmable Logic and …, 2017 | 43 | 2017 |
| Rapid real-time squiggle classification for read until using rawmap H Sadasivan, J Wadden, K Goliya, P Ranjan, RP Dickson, D Blaauw, ... Archives of clinical and biomedical research 7 (1), 45, 2023 | 32 | 2023 |
| VASim: An open virtual automata simulator for automata processing application and architecture research J Wadden, K Skadron University of Virginia, Tech. Rep. CS2016-03, 2016 | 31 | 2016 |
| AutomataZoo: A modern automata processing benchmark suite J Wadden, T Tracy, E Sadredini, L Wu, C Bo, J Du, Y Wei, J Udall, ... 2018 IEEE International Symposium on Workload Characterization (IISWC), 13-24, 2018 | 30 | 2018 |
| Electronic DNA analysis of CSF cell-free tumor DNA to quantify multi-gene molecular response in pediatric high-grade glioma AK Bruzek, K Ravi, A Muruganand, J Wadden, CM Babila, E Cantor, ... Clinical Cancer Research 26 (23), 6266-6276, 2020 | 29 | 2020 |
| Nondeterministic finite automata in hardware—the case of the Levenshtein automaton II Tommy Tracy, M Stan, N Brunelle, J Wadden, K Wang, K Skadron, ... Architectures and Systems for Big Data (ASBD), in conjunction with ISCA, 2015 | 28 | 2015 |
| Characterizing and mitigating output reporting bottlenecks in spatial automata processing architectures J Wadden, K Angstadt, K Skadron 2018 IEEE International Symposium on High Performance Computer Architecture …, 2018 | 26 | 2018 |
| MNCaRT: An open-source, multi-architecture automata-processing research and execution ecosystem K Angstadt, J Wadden, V Dang, T Xie, D Kramp, W Weimer, M Stan, ... IEEE Computer Architecture Letters 17 (1), 84-87, 2017 | 23 | 2017 |
| Accelerated seeding for genome sequence alignment with enumerated radix trees A Subramaniyan, J Wadden, K Goliya, N Ozog, X Wu, S Narayanasamy, ... 2021 ACM/IEEE 48th Annual International Symposium on Computer Architecture …, 2021 | 20 | 2021 |
| Regular expression acceleration on the micron automata processor: Brill tagging as a case study K Zhou, J Wadden, JJ Fox, K Wang, DE Brown, K Skadron 2015 IEEE International Conference on Big Data (Big Data), 355-360, 2015 | 20 | 2015 |
| Generating efficient and high-quality pseudo-random behavior on Automata Processors J Wadden, N Brunelle, K Wang, M El-Hadedy, G Robins, M Stan, ... 2016 IEEE 34th International Conference on Computer Design (ICCD), 622-629, 2016 | 19 | 2016 |
| Automata processing in reconfigurable architectures: In-the-cloud deployment, cross-platform evaluation, and fast symbol-only reconfiguration C Bo, V Dang, T Xie, J Wadden, M Stan, K Skadron ACM Transactions on Reconfigurable Technology and Systems (TRETS) 12 (2), 1-25, 2019 | 14 | 2019 |
| Automata-to-routing: An open-source toolchain for design-space exploration of spatial automata processing architectures J Wadden, S Khan, K Skadron 2017 IEEE 25th Annual International Symposium on Field-Programmable Custom …, 2017 | 13 | 2017 |
| Cell-free tumor DNA (cf-tDNA) liquid biopsy: Current methods and use in brain tumor immunotherapy J Wadden, K Ravi, V John, CM Babila, C Koschmann Frontiers in Immunology 13, 882452, 2022 | 12 | 2022 |
