Qiangfeng Cliff Zhang
Qiangfeng Cliff Zhang
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Systematic discovery of Xist RNA binding proteins
C Chu, QC Zhang, ST Da Rocha, RA Flynn, M Bharadwaj, JM Calabrese, ...
Cell 161 (2), 404-416, 2015
Structure-based prediction of protein–protein interactions on a genome-wide scale
QC Zhang, D Petrey, L Deng, L Qiang, Y Shi, CA Thu, B Bisikirska, ...
Nature 490 (7421), 556-560, 2012
Structural imprints in vivo decode RNA regulatory mechanisms
RC Spitale, RA Flynn, QC Zhang, P Crisalli, B Lee, JW Jung, ...
Nature 519 (7544), 486-490, 2015
RNA duplex map in living cells reveals higher-order transcriptome structure
Z Lu, QC Zhang, B Lee, RA Flynn, MA Smith, JT Robinson, C Davidovich, ...
Cell 165 (5), 1267-1279, 2016
Landscape and variation of RNA secondary structure across the human transcriptome
Y Wan, K Qu, QC Zhang, RA Flynn, O Manor, Z Ouyang, J Zhang, ...
Nature 505 (7485), 706-709, 2014
A transfer-RNA-derived small RNA regulates ribosome biogenesis
HK Kim, G Fuchs, S Wang, W Wei, Y Zhang, H Park, B Roy-Chaudhuri, ...
Nature 552 (7683), 57-62, 2017
Extensive variation in chromatin states across humans
M Kasowski, S Kyriazopoulou-Panagiotopoulou, F Grubert, JB Zaugg, ...
Science 342 (6159), 750-752, 2013
Revealing lncRNA structures and interactions by sequencing-based approaches
X Qian, J Zhao, PY Yeung, QC Zhang, CK Kwok
Trends in biochemical sciences 44 (1), 33-52, 2019
PrePPI: a structure-informed database of protein–protein interactions
QC Zhang, D Petrey, JI Garzón, L Deng, B Honig
Nucleic acids research 41 (D1), D828-D833, 2012
SCALE method for single-cell ATAC-seq analysis via latent feature extraction
L Xiong, K Xu, K Tian, Y Shao, L Tang, G Gao, M Zhang, T Jiang, ...
Nature communications 10 (1), 4576, 2019
RNA structure maps across mammalian cellular compartments
L Sun, FM Fazal, P Li, JP Broughton, B Lee, L Tang, W Huang, ET Kool, ...
Nature structural & molecular biology 26 (4), 322-330, 2019
U1 snRNP regulates chromatin retention of noncoding RNAs
Y Yin, JY Lu, X Zhang, W Shao, Y Xu, P Li, Y Hong, L Cui, G Shan, B Tian, ...
Nature 580 (7801), 147-150, 2020
Rapid evolutionary turnover underlies conserved lncRNA–genome interactions
JJ Quinn, QC Zhang, P Georgiev, IA Ilik, A Akhtar, HY Chang
Genes & development 30 (2), 191-207, 2016
In vivo structural characterization of the SARS-CoV-2 RNA genome identifies host proteins vulnerable to repurposed drugs
L Sun, P Li, X Ju, J Rao, W Huang, L Ren, S Zhang, T Xiong, K Xu, X Zhou, ...
Cell 184 (7), 1865-1883. e20, 2021
Cryo-EM structure of human dicer and its complexes with a pre-miRNA substrate
Z Liu, J Wang, H Cheng, X Ke, L Sun, QC Zhang, HW Wang
Cell 173 (5), 1191-1203. e12, 2018
Protein interface conservation across structure space
QC Zhang, D Petrey, R Norel, BH Honig
Proceedings of the National Academy of Sciences 107 (24), 10896-10901, 2010
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
RA Flynn, QC Zhang, RC Spitale, B Lee, MR Mumbach, HY Chang
Nature protocols 11 (2), 273-290, 2016
Critical roles of long noncoding RNAs in Drosophila spermatogenesis
K Wen, L Yang, T Xiong, C Di, D Ma, M Wu, Z Xue, X Zhang, L Long, ...
Genome research 26 (9), 1233-1244, 2016
Multivalent m6A motifs promote phase separation of YTHDF proteins
Y Gao, G Pei, D Li, R Li, Y Shao, QC Zhang, P Li
Cell research 29 (9), 767-769, 2019
A novel cell culture system modeling the SARS-CoV-2 life cycle
X Ju, Y Zhu, Y Wang, J Li, J Zhang, M Gong, W Ren, S Li, J Zhong, ...
PLoS pathogens 17 (3), e1009439, 2021
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