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Osman N. Yogurtcu
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Restricted mobility of conserved residues in protein-protein interfaces in molecular simulations
ON Yogurtcu, SB Erdemli, R Nussinov, M Turkay, O Keskin
Biophysical journal 94 (9), 3475-3485, 2008
852008
The United States COVID-19 Forecast Hub dataset
EY Cramer, Y Huang, Y Wang, EL Ray, M Cornell, J Bracher, A Brennen, ...
Scientific Data 9 (1), 1-15, 2022
822022
Collective cancer cell invasion induced by coordinated contractile stresses
AMJ Valencia, PH Wu, ON Yogurtcu, P Rao, J DiGiacomo, I Godet, L He, ...
Oncotarget 6 (41), 43438, 2015
792015
Cytosolic proteins can exploit membrane localization to trigger functional assembly
ON Yogurtcu, ME Johnson
PLOS Computational Biology 14 (3), e1006031, 2018
542018
A mechanochemical model of actin filaments
ON Yogurtcu, JS Kim, SX Sun
Biophysical journal 103 (4), 719-727, 2012
512012
Multiple models for outbreak decision support in the face of uncertainty
K Shea, RK Borchering, WJM Probert, E Howerton, TL Bogich, SL Li, ...
Proceedings of the National Academy of Sciences 120 (18), e2207537120, 2023
43*2023
Theory of bi-molecular association dynamics in 2D for accurate model and experimental parameterization of binding rates
ON Yogurtcu, ME Johnson
The Journal of Chemical Physics 143 (8), 2015
342015
Mechanical Response and Conformational Amplification in α-Helical Coiled Coils
ON Yogurtcu, CW Wolgemuth, SX Sun
Biophysical journal 99 (12), 3895-3904, 2010
312010
NERDSS: a nonequilibrium simulator for multibody self-assembly at the cellular scale
MJ Varga, Y Fu, S Loggia, ON Yogurtcu, ME Johnson
Biophysical journal 118 (12), 3026-3040, 2020
262020
Statistical thermodynamics of residue fluctuations in native proteins
ON Yogurtcu, M Gur, B Erman
The Journal of chemical physics 130 (9), 2009
222009
A Systematic Review of the Efforts and Hindrances of Modeling and Simulation of CAR T-cell Therapy
U Nukala, M Rodriguez Messan, ON Yogurtcu, X Wang, H Yang
The AAPS Journal 23, 1-20, 2021
212021
Benefit-risk assessment of COVID-19 vaccine, mRNA (Comirnaty) for age 16–29 years
PR Funk, ON Yogurtcu, RA Forshee, SA Anderson, PW Marks, H Yang
Vaccine 40 (19), 2781-2789, 2022
182022
TCPro: an In Silico Risk Assessment Tool for Biotherapeutic Protein Immunogenicity
ON Yogurtcu, ZE Sauna, JR McGill, MA Tegenge, H Yang
The AAPS Journal 21 (5), 96, 2019
152019
An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology
Y Fu, ON Yogurtcu, R Kothari, G Thorkelsdottir, AJ Sodt, ME Johnson
The Journal of Chemical Physics 151 (12), 2019
132019
Mathematical model of a personalized neoantigen cancer vaccine and the human immune system
M Rodriguez Messan, ON Yogurtcu, JR McGill, U Nukala, ZE Sauna, ...
PLOS Computational Biology 17 (9), e1009318, 2021
102021
SampPick: selection of a cohort of subjects matching a population HLA distribution
JR McGill, ON Yogurtcu, D Verthelyi, H Yang, ZE Sauna
Frontiers in Immunology 10, 494259, 2019
62019
Extracting gene regulation information from microarray time-series data using Hidden Markov Models
ON Yogurtçu, E Erzin, A Gursoy
Lecture Notes in Computer Science 4263, 144, 2006
62006
Predictive model for Zika virus RNA minipool nucleic acid testing in outbreak scenarios
ON Yogurtcu, H Yang, C Chancey, RA Forshee, AF Eder
Transfusion 59 (7), 2211-2217, 2019
42019
Analysis of tumor-immune functional responses in a mathematical model of neoantigen cancer vaccines
L Han, MR Messan, ON Yogurtcu, U Nukala, H Yang
Mathematical Biosciences 356, 108966, 2023
32023
Benefit-risk assessment of Covid-19 vaccine, MRNA (MRNA-1273) for males age 18–64 years
ON Yogurtcu, PR Funk, RA Forshee, SA Anderson, PW Marks, H Yang
Vaccine: X 14, 100325, 2023
22023
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Articles 1–20