Jan Ludwiczak
Jan Ludwiczak
Centre of New Technologies, University of Warsaw
Verified email at cent.uw.edu.pl
Cited by
Cited by
DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences
J Ludwiczak, A Winski, K Szczepaniak, V Alva, S Dunin-Horkawicz
Bioinformatics 35 (16), 2790-2795, 2019
Combining Rosetta with molecular dynamics (MD): A benchmark of the MD-based ensemble protein design
J Ludwiczak, A Jarmula, S Dunin-Horkawicz
Journal of structural biology 203 (1), 54-61, 2018
Phosphorylation of thymidylate synthase affects slow-binding inhibition by 5-fluoro-dUMP and N 4-hydroxy-dCMP
J Ludwiczak, P Maj, P Wilk, T Frączyk, T Ruman, B Kierdaszuk, A Jarmuła, ...
Molecular BioSystems 12 (4), 1333-1341, 2016
C8J_1298, a bifunctional thiol oxidoreductase of Campylobacter jejuni, affects Dsb (disulfide bond) network functioning
AM Banaś, KM Bocian-Ostrzycka, M Plichta, S Dunin-Horkawicz, ...
PloS one 15 (3), e0230366, 2020
PiPred–a deep-learning method for prediction of π-helices in protein sequences
J Ludwiczak, A Winski, AM da Silva Neto, K Szczepaniak, V Alva, ...
Scientific reports 9 (1), 1-9, 2019
Variability of the core geometry in parallel coiled-coil bundles
K Szczepaniak, J Ludwiczak, A Winski, S Dunin-Horkawicz
Journal of structural biology 204 (1), 117-124, 2018
Crystal structures of nematode (parasitic T. spiralis and free living C. elegans), compared to mammalian, thymidylate synthases (TS). Molecular docking and molecular dynamics …
A Jarmuła, P Wilk, P Maj, J Ludwiczak, A Dowierciał, K Banaszak, ...
Journal of Molecular Graphics and Modelling 77, 33-50, 2017
Self-analysis of repeat proteins reveals evolutionarily conserved patterns
M Merski, K Młynarczyk, J Ludwiczak, J Skrzeczkowski, ...
BMC bioinformatics 21, 1-17, 2020
Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins
M Adamczyk, E Lewicka, R Szatkowska, H Nieznanska, J Ludwiczak, ...
BMC Microbiology 21 (1), 1-16, 2021
β‐sheet breakers with consecutive phenylalanines: insights into mechanism of dissolution of β‐amyloid fibrils
A Jarmuła, J Ludwiczak, D Stępkowski
Proteins: Structure, Function, and Bioinformatics, 2021
A library of coiled-coil domains: from regular bundles to peculiar twists
K Szczepaniak, A Bukala, AM da Silva Neto, J Ludwiczak, ...
Bioinformatics, 2020
Interactions between motor domains in kinesin-14 Ncd—a molecular dynamics study
J Ludwiczak, E Szczęsna, AM da Silva Neto, P Cieplak, AA Kasprzak, ...
Biochemical Journal 476 (17), 2449-2462, 2019
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