Harmonization of cortical thickness measurements across scanners and sites JP Fortin, N Cullen, YI Sheline, WD Taylor, I Aselcioglu, PA Cook, ... NeuroImage 167, 104-120, 2018 | 915 | 2018 |
Harmonization of multi-site diffusion tensor imaging data JP Fortin, D Parker, B Tunç, T Watanabe, MA Elliott, K Ruparel, DR Roalf, ... Neuroimage 161, 149-170, 2017 | 850 | 2017 |
Functional normalization of 450k methylation array data improves replication in large cancer studies JP Fortin, A Labbe, M Lemire, BW Zanke, TJ Hudson, EJ Fertig, ... Genome biology 15 (11), 503, 2014 | 822 | 2014 |
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi JP Fortin, TJ Triche Jr, KD Hansen Bioinformatics 33 (4), 558-560, 2017 | 671 | 2017 |
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data JP Fortin, KD Hansen Genome biology 16, 1-23, 2015 | 312 | 2015 |
Removing inter-subject technical variability in magnetic resonance imaging studies JP Fortin, EM Sweeney, J Muschelli, CM Crainiceanu, RT Shinohara, ... NeuroImage 132, 198-212, 2016 | 127 | 2016 |
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ... Genome Biology 17 (1), 266, 2016 | 123 | 2016 |
Integrated digital pathology and transcriptome analysis identifies molecular mediators of T-cell exclusion in ovarian cancer M Desbois, AR Udyavar, L Ryner, C Kozlowski, Y Guan, M Dürrbaum, ... Nature communications 11 (1), 5583, 2020 | 119 | 2020 |
shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R JP Fortin, E Fertig, K Hansen F1000Research 3, 2014 | 109 | 2014 |
Neuroconductor: an R platform for medical imaging analysis J Muschelli, A Gherman, JP Fortin, B Avants, B Whitcher, JD Clayden, ... Biostatistics 20 (2), 218-239, 2019 | 51 | 2019 |
Multiple-gene targeting and mismatch tolerance can confound analysis of genome-wide pooled CRISPR screens JP Fortin, J Tan, KE Gascoigne, PM Haverty, WF Forrest, MR Costa, ... Genome biology 20, 1-25, 2019 | 35 | 2019 |
funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types K Oros Klein, S Grinek, S Bernatsky, L Bouchard, A Ciampi, I Colmegna, ... Bioinformatics 32 (4), 593-595, 2016 | 23 | 2016 |
A saturation mutagenesis screen uncovers resistant and sensitizing secondary KRAS mutations to clinical KRASG12C inhibitors S Feng, MG Callow, JP Fortin, Z Khan, D Bray, M Costa, Z Shi, W Wang, ... Proceedings of the National Academy of Sciences 119 (18), e2120512119, 2022 | 15 | 2022 |
A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies L Hoberecht, P Perampalam, A Lun, JP Fortin Nature Communications 13 (1), 6568, 2022 | 14 | 2022 |
Anti-α-synuclein c-terminal antibodies block PFF uptake and accumulation of phospho-synuclein in preclinical models of Parkinson's disease R Brendza, X Gao, KL Stark, H Lin, SH Lee, C Hu, H Cai, D DiCara, ... Neurobiology of Disease 177, 105969, 2023 | 6 | 2023 |
The Genome-Wide Molecular Landscape of HPV-Driven and HPV-Negative Head and Neck Squamous Cell Carcinoma F Faraji, AD Schubert, LT Kagohara, M Tan, Y Xu, M Zaidi, JP Fortin, ... Molecular Determinants of Head and Neck Cancer, 293-325, 2018 | 6 | 2018 |
Asymptotic eigenvalue distribution of random lifts JP Fortin, S Rudinsky The Waterloo Mathematics Review 2 (2), 1-10, 2012 | 4 | 2012 |
Compartmap enables inference of higher-order chromatin structure in individual cells from scRNA-seq and scATAC-seq BK Johnson, JP Fortin, KD Hansen, H Shen, T Triche Jr bioRxiv, 2021.05. 17.444465, 2021 | 1 | 2021 |
Minfi tutorial BioC2014 JPFKD Hansen | 1 | 2014 |
Statistical methods for epigenetic data and structural magnetic resonance imaging JP Fortin Johns Hopkins University, 2016 | | 2016 |