| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1027 | 2018 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 561 | 2021 |
| Vitamin K2 is a mitochondrial electron carrier that rescues pink1 deficiency M Vos, G Esposito, JN Edirisinghe, S Vilain, DM Haddad, JR Slabbaert, ... Science 336 (6086), 1306-1310, 2012 | 401 | 2012 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 335 | 2020 |
| Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319 M Eppinger, B Bunk, MA Johns, JN Edirisinghe, KK Kutumbaka, ... Journal of bacteriology 193 (16), 4199-4213, 2011 | 220 | 2011 |
| The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ... Nucleic acids research 49 (D1), D575-D588, 2021 | 163 | 2021 |
| Metabolic reconstruction and modeling microbial electrosynthesis CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ... Scientific reports 7 (1), 8391, 2017 | 119 | 2017 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 77 | 2016 |
| Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter JR Fagen, MT Leonard, CM McCullough, JN Edirisinghe, CS Henry, ... PLoS One 9 (1), e84469, 2014 | 76 | 2014 |
| Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine A Heinken, J Hertel, G Acharya, DA Ravcheev, M Nyga, OE Okpala, ... Nature Biotechnology 41 (9), 1320-1331, 2023 | 74 | 2023 |
| From DNA to FBA: how to build your own genome-scale metabolic model TGOCRAE Daniel A. Cuevas, Janaka Edirisinghe, Chris S. Henry, Ross Overbeek Frontiers of Microbiology, 2016 | 69 | 2016 |
| Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018 | 59 | 2018 |
| Modeling central metabolism and energy biosynthesis across microbial life JN Edirisinghe, P Weisenhorn, N Conrad, F Xia, R Overbeek, RL Stevens, ... Bmc Genomics 17, 1-11, 2016 | 42 | 2016 |
| AGORA2: Large scale reconstruction of the microbiome highlights wide-spread drug-metabolising capacities A Heinken, G Acharya, DA Ravcheev, J Hertel, M Nyga, OE Okpala, ... BioRxiv, 2020.11. 09.375451, 2020 | 35 | 2020 |
| Evolution of substrate specificity in a retained enzyme driven by gene loss AL Juarez-Vazquez, JN Edirisinghe, EA Verduzco-Castro, K Michalska, ... Elife 6, e22679, 2017 | 26 | 2017 |
| Constructing and analyzing metabolic flux models of microbial communities JP Faria, T Khazaei, JN Edirisinghe, P Weisenhorn, SMD Seaver, ... Hydrocarbon and Lipid Microbiology Protocols: Genetic, Genomic and System …, 2017 | 14 | 2017 |
| The DOE systems biology knowledgebase (KBase). bioRxiv 096354 AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... | 10 | 2016 |
| Metabolic Flux Analysis JO Krömer, LK Nielsen, LM Blank Methods in Molecular Biology. New York, NY, 2014 | 9 | 2014 |
| Computing and applying atomic regulons to understand gene expression and regulation JP Faria, JJ Davis, JN Edirisinghe, RC Taylor, P Weisenhorn, RD Olson, ... Frontiers in Microbiology 7, 1819, 2016 | 8 | 2016 |
| Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium N Gupta, KA Skinner, ZM Summers, JN Edirisinghe, JP Faria, ... Microbiology resource announcements 8 (25), 10.1128/mra. 00403-19, 2019 | 6 | 2019 |
Christopher HenryComputational Biologist, Argonne National LaboratoryVerified email at mcs.anl.gov
