| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 938 | 2013 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 363 | 2016 |
| The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ... Nature communications 5 (1), 4737, 2014 | 212 | 2014 |
| Cytokinin and auxin display distinct but interconnected distribution and signaling profiles to stimulate cambial activity J Immanen, K Nieminen, OP Smolander, M Kojima, JA Serra, P Koskinen, ... Current Biology 26 (15), 1990-1997, 2016 | 160 | 2016 |
| PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment P Koskinen, P Törönen, J Nokso-Koivisto, L Holm Bioinformatics 31 (10), 1544-1552, 2015 | 141 | 2015 |
| Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193 J Nykyri, O Niemi, P Koskinen, J Nokso-Koivisto, M Pasanen, M Broberg, ... PLoS Pathogens 8 (11), e1003013, 2012 | 119 | 2012 |
| SNP design from 454 sequencing of Podosphaera plantaginis transcriptome reveals a genetically diverse pathogen metapopulation with high levels of mixed-genotype infection C Tollenaere, H Susi, J Nokso-Koivisto, P Koskinen, A Tack, P Auvinen, ... PLoS One 7 (12), e52492, 2012 | 60 | 2012 |
| Genome sequence of Lactobacillus crispatus ST1 T Ojala, V Kuparinen, JP Koskinen, E Alatalo, L Holm, P Auvinen, ... Journal of Bacteriology 192 (13), 3547-3548, 2010 | 48 | 2010 |
| Flight‐induced changes in gene expression in the Glanville fritillary butterfly J Kvist, ALK Mattila, P Somervuo, V Ahola, P Koskinen, L Paulin, ... Molecular Ecology 24 (19), 4886-4900, 2015 | 39 | 2015 |
| Genome Sequence of Dickeya solani, a New soft Rot Pathogen of Potato, Suggests its Emergence May Be Related to a Novel Combination of Non-Ribosomal … L Garlant, P Koskinen, L Rouhiainen, P Laine, L Paulin, P Auvinen, ... Diversity 5 (4), 824-842, 2013 | 38 | 2013 |
| BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing P Somervuo, P Koskinen, P Mei, L Holm, P Auvinen, L Paulin BMC bioinformatics 19, 1-6, 2018 | 30 | 2018 |
| Transcriptome analysis reveals signature of adaptation to landscape fragmentation P Somervuo, J Kvist, S Ikonen, P Auvinen, L Paulin, P Koskinen, L Holm, ... PLoS One 9 (7), e101467, 2014 | 30 | 2014 |
| Complete genome sequence of Propionibacterium freudenreichii DSM 20271T P Koskinen, P Deptula, OP Smolander, F Tamene, J Kammonen, ... Standards in genomic sciences 10, 1-6, 2015 | 29 | 2015 |
| SANS: high-throughput retrieval of protein sequences allowing 50% mismatches JP Koskinen, L Holm Bioinformatics 28 (18), i438-i443, 2012 | 28 | 2012 |
| Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains K Savijoki, A Iivanainen, P Siljamäki, PK Laine, L Paulin, T Karonen, ... Journal of Proteome Research 13 (8), 3748-3762, 2014 | 24 | 2014 |
| Genome sequence of Pectobacterium sp. strain SCC3193 JP Koskinen, P Laine, O Niemi, J Nykyri, H Harjunpää, P Auvinen, ... Journal of bacteriology 194 (21), 6004-6004, 2012 | 20 | 2012 |
| A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees HX Ta, P Koskinen, L Holm Bioinformatics 27 (5), 700-706, 2011 | 20 | 2011 |
| Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1 O Niemi, P Laine, P Koskinen, M Pasanen, V Pennanen, H Harjunpää, ... Standards in Genomic Sciences 12 (1), 1-8, 2017 | 19 | 2017 |
| Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes J Österman, SA Mousavi, P Koskinen, L Paulin, K Lindström BMC genomics 16 (1), 1-14, 2015 | 19 | 2015 |
| gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output JI Kammonen, OP Smolander, L Paulin, PAB Pereira, P Laine, ... Plos one 14 (9), e0216885, 2019 | 12 | 2019 |
Petri AuvinenInstitute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
