Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019 | 292 | 2019 |
Disentangling the complexity of low complexity proteins P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ... Briefings in Bioinformatics 21 (2), 458-472, 2020 | 90 | 2020 |
Efficient embedding of complex networks to hyperbolic space via their Laplacian G Alanis-Lobato, P Mier, MA Andrade-Navarro Scientific reports 6 (1), 30108, 2016 | 88 | 2016 |
The 18S ribosomal RNA m6A methyltransferase Mettl5 is required for normal walking behavior in Drosophila J Leismann, M Spagnuolo, M Pradhan, L Wacheul, MA Vu, M Musheev, ... EMBO reports 21 (7), e49443, 2020 | 68 | 2020 |
The protein structure context of polyQ regions F Totzeck, MA Andrade-Navarro, P Mier PloS one 12 (1), e0170801, 2017 | 59 | 2017 |
Flanking regions determine the structure of the poly-glutamine in huntingtin through mechanisms common among glutamine-rich human proteins A Urbanek, M Popovic, A Morató, A Estaña, CA Elena-Real, P Mier, ... Structure 28 (7), 733-746. e5, 2020 | 55 | 2020 |
Manifold learning and maximum likelihood estimation for hyperbolic network embedding G Alanis-Lobato, P Mier, MA Andrade-Navarro Applied network science 1, 1-14, 2016 | 49 | 2016 |
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins P Jarnot, J Ziemska-Legiecka, L Dobson, M Merski, P Mier, ... Nucleic acids research 48 (W1), W77-W84, 2020 | 45 | 2020 |
C ontext characterization of amino acid homorepeats using evolution, position, and order P Mier, G Alanis‐Lobato, MA Andrade‐Navarro Proteins: Structure, Function, and Bioinformatics 85 (4), 709-719, 2017 | 41 | 2017 |
Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, Y Zhou Database 2019, baz085, 2019 | 40 | 2019 |
Proteome-wide comparison between the amino acid composition of domains and linkers D Brüne, MA Andrade-Navarro, P Mier BMC research notes 11, 1-6, 2018 | 40 | 2018 |
The latent geometry of the human protein interaction network G Alanis-Lobato, P Mier, M Andrade-Navarro Bioinformatics 34 (16), 2826-2834, 2018 | 34 | 2018 |
Protein-protein interactions can be predicted using coiled coil co-evolution patterns P Mier, G Alanis-Lobato, MA Andrade-Navarro Journal of Theoretical Biology 412, 198-203, 2017 | 28 | 2017 |
Evolutionary study of disorder in protein sequences K Kastano, G Erdős, P Mier, G Alanis-Lobato, VJ Promponas, Z Dosztányi, ... Biomolecules 10 (10), 1413, 2020 | 27 | 2020 |
The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context P Mier, C Elena-Real, A Urbanek, P Bernadó, MA Andrade-Navarro Computational and structural biotechnology journal 18, 306-313, 2020 | 21 | 2020 |
Glutamine codon usage and polyQ evolution in primates depend on the Q stretch length P Mier, MA Andrade-Navarro Genome biology and evolution 10 (3), 816-825, 2018 | 21 | 2018 |
Between interactions and aggregates: the PolyQ balance P Mier, MA Andrade-Navarro Genome Biology and Evolution 13 (11), evab246, 2021 | 20 | 2021 |
The role of low complexity regions in protein interaction modes: an illustration in huntingtin K Kastano, P Mier, MA Andrade-Navarro International Journal of Molecular Sciences 22 (4), 1727, 2021 | 18 | 2021 |
FastaHerder2: four ways to research protein function and evolution with clustering and clustered databases P Mier, MA Andrade-Navarro Journal of Computational Biology 23 (4), 270-278, 2016 | 17 | 2016 |
Low complexity induces structure in protein regions predicted as intrinsically disordered M Gonçalves-Kulik, P Mier, K Kastano, J Cortés, P Bernadó, F Schmid, ... Biomolecules 12 (8), 1098, 2022 | 16 | 2022 |