Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019 | 215 | 2019 |
Efficient embedding of complex networks to hyperbolic space via their Laplacian G Alanis-Lobato, P Mier, MA Andrade-Navarro Scientific reports 6 (1), 30108, 2016 | 79 | 2016 |
Disentangling the complexity of low complexity proteins P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ... Briefings in Bioinformatics 21 (2), 458-472, 2020 | 75 | 2020 |
The 18S ribosomal RNA m6A methyltransferase Mettl5 is required for normal walking behavior in Drosophila J Leismann, M Spagnuolo, M Pradhan, L Wacheul, MA Vu, M Musheev, ... EMBO reports 21 (7), e49443, 2020 | 57 | 2020 |
The protein structure context of polyQ regions F Totzeck, MA Andrade-Navarro, P Mier PloS one 12 (1), e0170801, 2017 | 50 | 2017 |
Manifold learning and maximum likelihood estimation for hyperbolic network embedding G Alanis-Lobato, P Mier, MA Andrade-Navarro Applied network science 1 (1), 1-14, 2016 | 43 | 2016 |
Flanking regions determine the structure of the poly-glutamine in huntingtin through mechanisms common among glutamine-rich human proteins A Urbanek, M Popovic, A Morató, A Estaña, CA Elena-Real, P Mier, ... Structure 28 (7), 733-746. e5, 2020 | 41 | 2020 |
C ontext characterization of amino acid homorepeats using evolution, position, and order P Mier, G Alanis‐Lobato, MA Andrade‐Navarro Proteins: Structure, Function, and Bioinformatics 85 (4), 709-719, 2017 | 33 | 2017 |
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins P Jarnot, J Ziemska-Legiecka, L Dobson, M Merski, P Mier, ... Nucleic acids research 48 (W1), W77-W84, 2020 | 31 | 2020 |
Proteome-wide comparison between the amino acid composition of domains and linkers D Brüne, MA Andrade-Navarro, P Mier BMC research notes 11, 1-6, 2018 | 30 | 2018 |
The latent geometry of the human protein interaction network G Alanis-Lobato, P Mier, M Andrade-Navarro Bioinformatics 34 (16), 2826-2834, 2018 | 26 | 2018 |
Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ... Database 2019, 2019 | 25 | 2019 |
Protein-protein interactions can be predicted using coiled coil co-evolution patterns P Mier, G Alanis-Lobato, MA Andrade-Navarro Journal of Theoretical Biology 412, 198-203, 2017 | 24 | 2017 |
Evolutionary study of disorder in protein sequences K Kastano, G Erdős, P Mier, G Alanis-Lobato, VJ Promponas, Z Dosztányi, ... Biomolecules 10 (10), 1413, 2020 | 20 | 2020 |
Glutamine codon usage and polyQ evolution in primates depend on the Q stretch length P Mier, MA Andrade-Navarro Genome biology and evolution 10 (3), 816-825, 2018 | 17 | 2018 |
FastaHerder2: four ways to research protein function and evolution with clustering and clustered databases P Mier, MA Andrade-Navarro Journal of Computational Biology 23 (4), 270-278, 2016 | 17 | 2016 |
The importance of definitions in the study of polyQ regions: A tale of thresholds, impurities and sequence context P Mier, C Elena-Real, A Urbanek, P Bernadó, MA Andrade-Navarro Computational and structural biotechnology journal 18, 306-313, 2020 | 16 | 2020 |
dAPE: a web server to detect homorepeats and follow their evolution P Mier, MA Andrade-Navarro Bioinformatics 33 (8), 1221-1223, 2017 | 14 | 2017 |
Repeatability in protein sequences M Kamel, P Mier, A Tari, MA Andrade-Navarro Journal of structural biology 208 (2), 86-91, 2019 | 12 | 2019 |
Fungal Smn and Spf30 homologues are mainly present in filamentous fungi and genomes with many introns: implications for spinal muscular atrophy P Mier, AJ Pérez-Pulido Gene 491 (2), 135-141, 2012 | 12 | 2012 |