| Molecular ecological network analyses Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou BMC bioinformatics 13, 1-20, 2012 | 2380 | 2012 |
| The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages S Shi, EE Nuccio, ZJ Shi, Z He, J Zhou, MK Firestone Ecology letters 19 (8), 926-936, 2016 | 930 | 2016 |
| Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2 J Zhou, Y Deng, F Luo, Z He, Y Yang MBio 2 (4), 10.1128/mbio. 00122-11, 2011 | 830 | 2011 |
| Functional molecular ecological networks J Zhou, Y Deng, F Luo, Z He, Q Tu, X Zhi MBio 1 (4), 10.1128/mbio. 00169-10, 2010 | 828 | 2010 |
| Stochasticity, succession, and environmental perturbations in a fluidic ecosystem J Zhou, YE Deng, P Zhang, K Xue, Y Liang, JD Van Nostrand, Y Yang, ... Proceedings of the National Academy of Sciences 111 (9), E836-E845, 2014 | 736 | 2014 |
| GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes Z He, TJ Gentry, CW Schadt, L Wu, J Liebich, SC Chong, Z Huang, W Wu, ... The ISME journal 1 (1), 67-77, 2007 | 730 | 2007 |
| Global diversity and biogeography of bacterial communities in wastewater treatment plants L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan, Q Zhang, MR Brown, Z Li, ... Nature microbiology 4 (7), 1183-1195, 2019 | 647 | 2019 |
| Microbial mediation of carbon-cycle feedbacks to climate warming J Zhou, K Xue, J Xie, YE Deng, L Wu, X Cheng, S Fei, S Deng, Z He, ... Nature Climate Change 2 (2), 106-110, 2012 | 643 | 2012 |
| Temperature mediates continental-scale diversity of microbes in forest soils J Zhou, YE Deng, L Shen, C Wen, Q Yan, D Ning, Y Qin, K Xue, L Wu, ... Nature communications 7 (1), 12083, 2016 | 595 | 2016 |
| Reproducibility and quantitation of amplicon sequencing-based detection J Zhou, L Wu, Y Deng, X Zhi, YH Jiang, Q Tu, J Xie, JD Van Nostrand, ... The ISME journal 5 (8), 1303-1313, 2011 | 463 | 2011 |
| High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats J Zhou, Z He, Y Yang, Y Deng, SG Tringe, L Alvarez-Cohen MBio 6 (1), 10.1128/mbio. 02288-14, 2015 | 426 | 2015 |
| Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation Y Deng, P Zhang, Y Qin, Q Tu, Y Yang, Z He, CW Schadt, J Zhou Environmental Microbiology 18 (1), 205-218, 2016 | 394 | 2016 |
| Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community CL Hemme, Y Deng, TJ Gentry, MW Fields, L Wu, S Barua, K Barry, ... The ISME journal 4 (5), 660-672, 2010 | 391 | 2010 |
| GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity Z He, Y Deng, JD Van Nostrand, Q Tu, M Xu, CL Hemme, X Li, L Wu, ... The ISME journal 4 (9), 1167-1179, 2010 | 384 | 2010 |
| Biodiversity and species competition regulate the resilience of microbial biofilm community K Feng, Z Zhang, W Cai, W Liu, M Xu, H Yin, A Wang, Z He, Y Deng Molecular ecology 26 (21), 6170-6182, 2017 | 382 | 2017 |
| Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming K Xue, M M. Yuan, Z J. Shi, Y Qin, YE Deng, L Cheng, L Wu, Z He, ... Nature Climate Change 6 (6), 595-600, 2016 | 343 | 2016 |
| Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2 Z He, M Xu, Y Deng, S Kang, L Kellogg, L Wu, JD Van Nostrand, ... Ecology Letters 13 (5), 564-575, 2010 | 331 | 2010 |
| Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community J Zhou, W Liu, Y Deng, YH Jiang, K Xue, Z He, JD Van Nostrand, L Wu, ... MBio 4 (2), 10.1128/mbio. 00584-12, 2013 | 328 | 2013 |
| Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume Z Lu, Y Deng, JD Van Nostrand, Z He, J Voordeckers, A Zhou, YJ Lee, ... The ISME Journal 6 (2), 451-460, 2012 | 314 | 2012 |
| Climate warming leads to divergent succession of grassland microbial communities X Guo, J Feng, Z Shi, X Zhou, M Yuan, X Tao, L Hale, T Yuan, J Wang, ... Nature Climate Change 8 (9), 813-818, 2018 | 309 | 2018 |
