Rob Knight
Rob Knight
Director, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSD
Verified email at ucsd.edu - Homepage
TitleCited byYear
QIIME allows analysis of high-throughput community sequencing data
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...
Nature methods 7 (5), 335, 2010
168202010
UCHIME improves sensitivity and speed of chimera detection
RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight
Bioinformatics 27 (16), 2194-2200, 2011
69692011
A core gut microbiome in obese and lean twins
PJ Turnbaugh, M Hamady, T Yatsunenko, BL Cantarel, A Duncan, RE Ley, ...
nature 457 (7228), 480, 2009
55432009
Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
46392012
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone, R Knight
Appl. Environ. Microbiol. 71 (12), 8228-8235, 2005
44892005
Obesity alters gut microbial ecology
RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon
Proceedings of the National Academy of Sciences 102 (31), 11070-11075, 2005
42932005
Human gut microbiome viewed across age and geography
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
nature 486 (7402), 222, 2012
38512012
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, J Huntley, N Fierer, ...
The ISME journal 6 (8), 1621, 2012
37772012
The human microbiome project
PJ Turnbaugh, RE Ley, M Hamady, CM Fraser-Liggett, R Knight, ...
Nature 449 (7164), 804, 2007
36312007
Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
34852011
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ...
Proceedings of the national academy of sciences 108 (Supplement 1), 4516-4522, 2011
33052011
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814, 2013
30712013
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
MG Dominguez-Bello, EK Costello, M Contreras, M Magris, G Hidalgo, ...
Proceedings of the National Academy of Sciences 107 (26), 11971-11975, 2010
27902010
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610, 2012
25992012
PyNAST: a flexible tool for aligning sequences to a template alignment
JG Caporaso, K Bittinger, FD Bushman, TZ DeSantis, GL Andersen, ...
Bioinformatics 26 (2), 266-267, 2009
25692009
Evolution of mammals and their gut microbes
RE Ley, M Hamady, C Lozupone, PJ Turnbaugh, RR Ramey, JS Bircher, ...
Science 320 (5883), 1647-1651, 2008
23752008
Diversity, stability and resilience of the human gut microbiota
CA Lozupone, JI Stombaugh, JI Gordon, JK Jansson, R Knight
Nature 489 (7415), 220, 2012
23742012
Bacterial community variation in human body habitats across space and time
EK Costello, CL Lauber, M Hamady, N Fierer, JI Gordon, R Knight
Science 326 (5960), 1694-1697, 2009
23202009
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
CL Lauber, M Hamady, R Knight, N Fierer
Appl. Environ. Microbiol. 75 (15), 5111-5120, 2009
20602009
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
PJ Turnbaugh, VK Ridaura, JJ Faith, FE Rey, R Knight, JI Gordon
Science translational medicine 1 (6), 6ra14-6ra14, 2009
20322009
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