| Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014 | 918 | 2014 |
| Reprogramming to recover youthful epigenetic information and restore vision Y Lu, B Brommer, X Tian, A Krishnan, M Meer, C Wang, DL Vera, Q Zeng, ... Nature 588 (7836), 124-129, 2020 | 523 | 2020 |
| Open chromatin reveals the functional maize genome E Rodgers-Melnick, DL Vera, HW Bass, ES Buckler Proceedings of the National Academy of Sciences 113 (22), E3177-E3184, 2016 | 240 | 2016 |
| Loss of epigenetic information as a cause of mammalian aging JH Yang, M Hayano, PT Griffin, JA Amorim, MS Bonkowski, ... Cell 186 (2), 305-326. e27, 2023 | 237 | 2023 |
| The maize W22 genome provides a foundation for functional genomics and transposon biology NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ... Nature genetics 50 (9), 1282-1288, 2018 | 195 | 2018 |
| Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert Genome research 25 (8), 1104-1113, 2015 | 176 | 2015 |
| Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq C Marchal, T Sasaki, D Vera, K Wilson, J Sima, JC Rivera-Mulia, ... Nature protocols 13 (5), 819-839, 2018 | 145 | 2018 |
| Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize DL Vera, TF Madzima, JD Labonne, MP Alam, GG Hoffman, ... The Plant Cell 26 (10), 3883-3893, 2014 | 85 | 2014 |
| Allele-specific control of replication timing and genome organization during development JC Rivera-Mulia, A Dimond, D Vera, C Trevilla-Garcia, T Sasaki, ... Genome research 28 (6), 800-811, 2018 | 73 | 2018 |
| Stability of wake-sleep cycles requires robust degradation of the PERIOD protein M D’Alessandro, S Beesley, JK Kim, Z Jones, R Chen, J Wi, K Kyle, ... Current Biology 27 (22), 3454-3467. e8, 2017 | 50 | 2017 |
| DNA break-induced epigenetic drift as a cause of mammalian aging M Hayano, JH Yang, MS Bonkowski, JA Amorim, JM Ross, G Coppotelli, ... BioRxiv, 808659, 2019 | 41 | 2019 |
| The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed BS Sexton, D Avey, BR Druliner, JA Fincher, DL Vera, DJ Grau, ... Genome research 24 (2), 251-259, 2014 | 39 | 2014 |
| The regulatory landscape of early maize inflorescence development RK Parvathaneni, E Bertolini, M Shamimuzzaman, DL Vera, PY Lung, ... Genome biology 21, 1-33, 2020 | 38 | 2020 |
| Erosion of the epigenetic landscape and loss of cellular identity as a cause of aging in mammals JH Yang, PT Griffin, DL Vera, JK Apostolides, M Hayano, MV Meer, ... BioRxiv, 808642, 2019 | 38 | 2019 |
| An hPSC-derived tissue-resident macrophage model reveals differential responses of macrophages to ZIKV and DENV infection J Lang, Y Cheng, A Rolfe, C Hammack, D Vera, K Kyle, J Wang, ... Stem cell reports 11 (2), 348-362, 2018 | 38 | 2018 |
| Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia T Sasaki, JC Rivera-Mulia, D Vera, J Zimmerman, S Das, M Padget, ... Experimental hematology 51, 71-82. e3, 2017 | 37 | 2017 |
| Modeling dengue virus-hepatic cell interactions using human pluripotent stem cell-derived hepatocyte-like cells J Lang, D Vera, Y Cheng, H Tang Stem cell reports 7 (3), 341-354, 2016 | 35 | 2016 |
| Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales JA Fincher, DL Vera, DD Hughes, KM McGinnis, JH Dennis, HW Bass Plant physiology 162 (2), 1127-1141, 2013 | 30 | 2013 |
| Genetic Dissection of Dual Roles for the Transcription Factor six7 in Photoreceptor Development and Patterning in Zebrafish M Sotolongo-Lopez, K Alvarez-Delfin, CJ Saade, DL Vera, JM Fadool PLoS genetics 12 (4), e1005968, 2016 | 27 | 2016 |
| Reversal of ageing-and injury-induced vision loss by Tet-dependent epigenetic reprogramming Y Lu, A Krishnan, B Brommer, X Tian, M Meer, DL Vera, C Wang, Q Zeng, ... BioRxiv, 710210, 2019 | 26 | 2019 |
Jonathan H. DennisAssistant Professor, Florida State UniversityVerified email at bio.fsu.edu
