Tommy Kaplan
Tommy Kaplan
Professor of Computer Science and Computational Biology, The Hebrew University
Verified email at - Homepage
Cited by
Cited by
Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease
J Moss, J Magenheim, D Neiman, H Zemmour, N Loyfer, A Korach, ...
Nature communications 9 (1), 5068, 2018
Single-nucleosome mapping of histone modifications in S. cerevisiae
CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, ...
PLoS biology 3 (10), e328, 2005
Dynamics of replication-independent histone turnover in budding yeast
MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando
Science 315 (5817), 1405, 2007
Disease-associated astrocytes in Alzheimer’s disease and aging
N Habib, C McCabe, S Medina, M Varshavsky, D Kitsberg, ...
Nature neuroscience 23 (6), 701-706, 2020
Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
MM Harrison, XY Li, T Kaplan, MR Botchan, MB Eisen
PLoS genetics 7 (10), e1002266, 2011
Modeling dependencies in protein-DNA binding sites
Y Barash, G Elidan, N Friedman, T Kaplan
Proceedings of the seventh annual international conference on Research in …, 2003
Large-scale discovery of enhancers from human heart tissue
D May, MJ Blow, T Kaplan, DJ McCulley, BC Jensen, JA Akiyama, A Holt, ...
Nature genetics 44 (1), 89-93, 2012
Structure and function of a transcriptional network activated by the MAPK Hog1
AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea
Nature genetics 40 (11), 1300-1306, 2008
A high-resolution enhancer atlas of the developing telencephalon
A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ...
Cell 152 (4), 895-908, 2013
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
M Yassour, T Kaplan, HB Fraser, JZ Levin, J Pfiffner, X Adiconis, ...
Proceedings of the National Academy of Sciences 106 (9), 3264-3269, 2009
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ...
PLoS genetics 7 (2), e1001290, 2011
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition
XY Li, MM Harrison, JE Villalta, T Kaplan, MB Eisen
Elife 3, e03737, 2014
A DNA methylation atlas of normal human cell types
N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno, A Klochendler, ...
Nature 613 (7943), 355-364, 2023
Cell cycle–and chaperone-mediated regulation of H3K56ac incorporation in yeast
T Kaplan, CL Liu, JA Erkmann, J Holik, M Grunstein, PD Kaufman, ...
PLoS genetics 4 (11), e1000270, 2008
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
KN Schulz, ER Bondra, A Moshe, JE Villalta, JD Lieb, T Kaplan, ...
Genome research 25 (11), 1715-1726, 2015
Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains
G Ron, Y Globerson, D Moran, T Kaplan
Nature Communications 8 (1), 2237, 2017
Ab initio prediction of transcription factor targets using structural knowledge
T Kaplan, N Friedman, H Margalit
PLoS computational biology 1 (1), e1, 2005
Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression
M Paris, T Kaplan, XY Li, JE Villalta, SE Lott, MB Eisen
PLoS genetics 9 (9), e1003748, 2013
ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin
R Sadeh, I Sharkia, G Fialkoff, A Rahat, J Gutin, A Chappleboim, M Nitzan, ...
Nature Biotechnology, 1-13, 2021
Roles for H2A.Z and Its Acetylation in GAL1 Transcription and Gene Induction, but Not GAL1-Transcriptional Memory
JE Halley, T Kaplan, AY Wang, MS Kobor, J Rine
PLoS biology 8 (6), e1000401, 2010
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